Plant FIBer expression Database

Lus10042554 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04550 143 / 2e-41 unknown protein
AT5G28500 127 / 2e-35 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034543
[exp]
64 / 2e-12 AT5G42170 254 / 3e-81 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G044900
[exp]
195 / 3e-61 AT3G04550 421 / 6e-145 unknown protein
PFAM info
Representative CDS sequence
>Lus10042554 pacid=23181763 polypeptide=Lus10042554 locus=Lus10042554.g ID=Lus10042554.BGIv1.0 annot-version=v1.0
ATGAAAATCGGGGAAGTTGGAGAGGCGCCTACAGTGAAACTCCTGCCGGTTTGCAGATCGGAGGATGAAATTACGGAAGCACCGTGGGAATTGAGTAGTG
AGGGGGAGTTTGGGACGGTGGTGGCGGAGAAAGGATGGCGGAGGTGGGTGGTGTTGCCAGGATGGTCGCCGGTGGCGGGGCTGGGGAACGGCGGAGTTGC
GGTGTCGTTTAGCGATGCGAGGGCGCTGCCGTGGAGGGTGAATCGGTGGTATAAGGAGGAAGCGATTTTGGTAGTGGTGGATAGAGATAGAGAGGTAGTG
GAGGTGGATGATGGGTTTTATTTGGTGGCGGTGGAAGGGACCGGGGATGGCCGGAGCGGTGGGTTGAAGGTGGAGAGAGGGTCGGCGTTGAAGTTGAGAG
GAGTTGAGGGGAGTTTAGGGACGGTGGTTTTGGTGGTGAGGCCGCCTAAGGAAGATAATGAAGATCAGCAGACTGAGGAGGATTGGGAGTGA
AA sequence
>Lus10042554 pacid=23181763 polypeptide=Lus10042554 locus=Lus10042554.g ID=Lus10042554.BGIv1.0 annot-version=v1.0
MKIGEVGEAPTVKLLPVCRSEDEITEAPWELSSEGEFGTVVAEKGWRRWVVLPGWSPVAGLGNGGVAVSFSDARALPWRVNRWYKEEAILVVVDRDREVV
EVDDGFYLVAVEGTGDGRSGGLKVERGSALKLRGVEGSLGTVVLVVRPPKEDNEDQQTEEDWE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G04550 unknown protein Lus10042554
[exp]
0 1
AT2G48070 RPH1 resistance to phytophthora 1 (... Lus10029632
[exp]
2.4 0.9033
AT4G02980 ABP1 endoplasmic reticulum auxin bi... Lus10042673
[exp]
3.7 0.8781
AT3G48200 unknown protein Lus10039976
[exp]
7.1 0.8740
AT1G12900 GAPA-2 glyceraldehyde 3-phosphate deh... Lus10041502
[exp]
10.0 0.8732
AT1G26220 Acyl-CoA N-acyltransferases (N... Lus10029099
[exp]
15.7 0.8529
AT4G21870 HSP20-like chaperones superfam... Lus10007666
[exp]
16.7 0.8018
AT4G24700 unknown protein Lus10041942
[exp]
19.5 0.8730
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Lus10007837
[exp]
20.2 0.8491
AT5G63090 AS2 LOBB, LOB Lateral organ boundaries (LOB)... Lus10022264
[exp]
21.8 0.7683
AT5G36930 Disease resistance protein (TI... Lus10004719
[exp]
21.9 0.8204

Lus10042554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.