Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 581 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 574 / 0 Subtilase family protein (.1) AT5G58840 570 / 0 Subtilase family protein (.1) AT5G59120 565 / 0 ATSBT4.13 subtilase 4.13 (.1) AT3G46840 564 / 0 Subtilase family protein (.1) AT5G59090 561 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58830 551 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59130 547 / 0 Subtilase family protein (.1.2) AT5G58820 540 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 538 / 0 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002964 [exp] 1332 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 637 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004685 [exp] 633 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009868 [exp] 607 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 578 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009867 [exp] 577 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004686 [exp] 574 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10016484 [exp] 556 / 0 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040750 [exp] 551 / 0 AT5G59120 714 / 0.0 subtilase 4.13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133200 [exp] 719 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.003G120101 [exp] 682 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.010G196800 [exp] 662 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 643 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G037900 [exp] 599 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 595 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 584 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.002G151900 [exp] 545 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 535 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 489 / 1e-162 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10042555 pacid=23182043 polypeptide=Lus10042555 locus=Lus10042555.g ID=Lus10042555.BGIv1.0 annot-version=v1.0 ATGAACACGATCGGAAGTGACCGGCGCCGGTGGCTCTCTGTTCTTTATCCGATAGTGCTGCTGGCAGCAATGCTAGTGCATTGCAACGCCGACGACGATA GGAAGATTCATGTTGTGTACATGGGAGGCCTGCCAGATGACGGCGTTACGTCGGCTCACCACGTTTCCCTGTTGGAAAATGTCCTCGGAAGCGCTTCACT GGCGCAAGAGTCGCTGGTGTGCAGCTACGGAAGGAGCTTCAATGGCTTTGCCGCCAAATTATCACCTGAAGAAGTTGAAAAGTTCTCAAAGATGGAGGGA GTGATCTCTGTAATCCCTAACCGCAAGTTACAACTTCACACCACTCGTTCATGGGAGTTCATGAATTTCTCTCCTATGCAAATTAGTCCCCGAGCAGAAG GAGATGATGTCATCATTGGCCTACTCGATTCAGGAATTTGGCCAGAATCGGAAAGCTTCAATGACGAAGGAATGACTCCGACGCCGGCGAGGTGGAGAGG AGAATGCCACAAGAACATTACCTGCAACAAAAAAATAATCGGAGCCCGGTACTACAGAAGCGACGGCATCTATGACGACAAGGAATTCAAGTCCCCCAGA GACGCAGAAGGACACGGGAGCCACACTTCTTCCATCGCCGCCGGCCGAGAAGTAGCCGGAGTTAGCTTTTCCGGTCTAGCGGAAGGAACTGCGACTGGTG GGGTTCCGAACGCGAGGATCGCTGTTTACAAAGTCTGCTGGTTGCATCACGGCTGCAATCTCGCCGACATCCTTGCCGGATTCGACGACGCTATAGCAGA CGGCGTCGACATCTTGTCCGTGTCTTTAGGGATATGGGGTCACTCACCTCCATTCTTGGAGGATCCCTTGGCCATCGGAGCTTTCCATGCCATGAAACAC GGCGTTTTAACCTCGGCCTCCGCCGGCAACGAAGGTCCTTTGCCGGGCTATGTGACCAACGCAGCACCGTGGATTTTGACCGTGGCGGCGAGTACTATCG ACCGCAAGTTCGTCACCAAACTCTTCCTTGGAAATGGACAAACCTTCATCGGCTCATCAATTGATAGCTACGAGCTGAGTGGAACTACAATACCCTTGGT ATGGGCTGGAAACGTGATGAATTACTCCGGTAATCACAGCGCCGACGACGTCGAGAGTTGCTTGCCAGACAGTCTTGATTCAACCAAAGCAGCTGGGAAT ATTATCCTCTGTAACGGTTCATATGCAGACTTCATTGGAGCTATGATGGCTAATGGTGCAGCAGCAATTCTGCCGTTCCCAAATCCTTTCTTCAGCGACG TTCGTCAGAGATGTTGCACCAAGTTTACCACTAGGGACCCCATTGCAACTATACTTGCTGGTGAAACATGGGAGGATGTTATGTCGCCTTACGTTGCTTC CTTTTCTTCTAGAGGACCAAACAGTCTCAGCCCTGAGATCCTTAAGCCAGACATCACCGCGCCTGGTGTCGATATTCTGGCTGCTTGGTCTCCTGTCAAT CCGCCTTCAGGGTTTGAATTCGATACAAGGGAGGCACACTACAATATGATCTCCGGGACATCGATGTCTTGCCCACACGTAAGCTCGGTTGCTTCATATG TCAAGGCTCTCCATCCGGAATGGTCCCCAGCTGCGATTAAATCTGCAATCATAACAACAGCTACAATAATGGACCCTAGGAAGACCAATGCTAGCGAATT CGCCTATGGTGCTGGCCATGTCAACCCATTGGCAGCAGCGAAACCAGGGTTGGTCTACGATGCATACGAAGCCGATTACATCCATTATCTCTGCAAGAAA GCATACAACACCAGCCAGATAAAGTTGGTCGCCGGCCAGAGCAATGCTTCTTGTGAAGGAGTGGTTCCGGGGAGAGCATGGGATCTGAACTATCCCACAT TTGGCGTAGTGGTTGAAGATGGTCAACCGATCAGCGCAACTTTCACTAGAACGGTATCAAACGTTGGCACTTTGAATTCCACTTACTATGTTAGTACACA GATGCCGGAAGTTGTGACGGTGGAAGTTAGTCCAGCAGTGTTGTCTTTTTCGGATGTTTGGGAGAAGAAGACGTTTACGGTGAAAGTCTCGGGTCCAAAG ATTGCTGAGGAGGCGATTATGTCGGGAGCCATTGTGTGGGAAGATGGAGTTCATGTGGTTCGGAGTCCGTTGGTTGTTTATAGATTTATGTCGAATTCTG ATACGGTTGCTGCATCGCGCTTCAGATTAACTGATCATAAGAGGAGATTCAGGGAGCCATGA
AA sequence Show only first row Show all	>Lus10042555 pacid=23182043 polypeptide=Lus10042555 locus=Lus10042555.g ID=Lus10042555.BGIv1.0 annot-version=v1.0 MNTIGSDRRRWLSVLYPIVLLAAMLVHCNADDDRKIHVVYMGGLPDDGVTSAHHVSLLENVLGSASLAQESLVCSYGRSFNGFAAKLSPEEVEKFSKMEG VISVIPNRKLQLHTTRSWEFMNFSPMQISPRAEGDDVIIGLLDSGIWPESESFNDEGMTPTPARWRGECHKNITCNKKIIGARYYRSDGIYDDKEFKSPR DAEGHGSHTSSIAAGREVAGVSFSGLAEGTATGGVPNARIAVYKVCWLHHGCNLADILAGFDDAIADGVDILSVSLGIWGHSPPFLEDPLAIGAFHAMKH GVLTSASAGNEGPLPGYVTNAAPWILTVAASTIDRKFVTKLFLGNGQTFIGSSIDSYELSGTTIPLVWAGNVMNYSGNHSADDVESCLPDSLDSTKAAGN IILCNGSYADFIGAMMANGAAAILPFPNPFFSDVRQRCCTKFTTRDPIATILAGETWEDVMSPYVASFSSRGPNSLSPEILKPDITAPGVDILAAWSPVN PPSGFEFDTREAHYNMISGTSMSCPHVSSVASYVKALHPEWSPAAIKSAIITTATIMDPRKTNASEFAYGAGHVNPLAAAKPGLVYDAYEADYIHYLCKK AYNTSQIKLVAGQSNASCEGVVPGRAWDLNYPTFGVVVEDGQPISATFTRTVSNVGTLNSTYYVSTQMPEVVTVEVSPAVLSFSDVWEKKTFTVKVSGPK IAEEAIMSGAIVWEDGVHVVRSPLVVYRFMSNSDTVAASRFRLTDHKRRFREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	0	1
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	1.7	0.8555
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	3.2	0.8448
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	4.5	0.8196
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	5.7	0.8014
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	6.2	0.8198
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	6.5	0.8155
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029587 [exp]	8.8	0.7853
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	11.2	0.7817
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10012206 [exp]	11.7	0.7606
					Lus10000961 [exp]	11.8	0.7737

Compare expression of checked genes

Lus10042555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.