Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49450 47 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021014 [exp] 122 / 3e-33 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 115 / 1e-30 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 68 / 1e-13 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 68 / 1e-13 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 40 / 0.0004 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038400 [exp] 48 / 8e-07 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 46 / 4e-06 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042556 pacid=23181721 polypeptide=Lus10042556 locus=Lus10042556.g ID=Lus10042556.BGIv1.0 annot-version=v1.0 ATGGGAGGGTTTTACGGAGTTTCCTCCTTTCTCCACACCATTGATTTCGACCTGCCGCCGCCGCTTCCAGATCCGGATCTTGCCGTCCTGGTGGCCGGTG AAGATCCGACCGCCGTGAATAAAAATCGCCTTCACCAGTCCGCTCTTCTACTCGAATCCGGCGAATTCTTCCAGATCCCTCCGCACGCGGATGTTCTTGC TGTCGGAACCGGTGTACTGCAAGTCGCCGGAGACGGCGAGCGAGTACACATGTCCTTGTTGCTGCCCGACGATCGATCCGATCAGGCAATCGTGATCGGC GTTGTCGTCGTCGTTGGTGATGAGAGCAGGTGGTTGATGTTCGTCGGAGAATCGGAGTTGCTGCTGGAATTGGAGTTCCGTGGAGTGCTGGTTGAGCTGG AGGAATCGGAGGTCGGACTGTTGATGATGATGTCGCTGTTGTATTCTCCGGTGGGATGGAGGTCGAAGTTTAGGAGTTCGGCGAGTTTGAGGTGA
AA sequence Show only first row Show all	>Lus10042556 pacid=23181721 polypeptide=Lus10042556 locus=Lus10042556.g ID=Lus10042556.BGIv1.0 annot-version=v1.0 MGGFYGVSSFLHTIDFDLPPPLPDPDLAVLVAGEDPTAVNKNRLHQSALLLESGEFFQIPPHADVLAVGTGVLQVAGDGERVHMSLLLPDDRSDQAIVIG VVVVVGDESRWLMFVGESELLLELEFRGVLVELEESEVGLLMMMSLLYSPVGWRSKFRSSASLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042556 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10016598 [exp]	37.4	0.6382
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	39.2	0.6499
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	47.3	0.6324
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	53.7	0.6448
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	59.9	0.6739
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	68.5	0.6713
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10041302 [exp]	74.5	0.6425
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	122.0	0.5918
					Lus10039654 [exp]	151.9	0.6223
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	188.1	0.6040

Compare expression of checked genes

Lus10042556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.