Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20410 293 / 6e-99 RNA-binding ASCH domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022016 [exp] 447 / 1e-160 AT2G20410 285 / 4e-96 RNA-binding ASCH domain protein (.1) Lus10006580 [exp] 340 / 9e-118 AT2G20410 327 / 2e-111 RNA-binding ASCH domain protein (.1) Lus10028672 [exp] 322 / 1e-109 AT2G20410 309 / 1e-103 RNA-binding ASCH domain protein (.1) Lus10014656 [exp] 313 / 7e-104 AT2G20410 295 / 1e-95 RNA-binding ASCH domain protein (.1) Lus10000855 [exp] 45 / 1e-05 AT2G20410 55 / 2e-09 RNA-binding ASCH domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G017900 [exp] 313 / 4e-107 AT2G20410 288 / 2e-96 RNA-binding ASCH domain protein (.1) Potri.013G045800 [exp] 302 / 3e-104 AT2G20410 281 / 3e-95 RNA-binding ASCH domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04266 [flax] [poplar] ASCH ASCH domain
Representative CDS sequence Show only first row Show all	>Lus10042558 pacid=23181657 polypeptide=Lus10042558 locus=Lus10042558.g ID=Lus10042558.BGIv1.0 annot-version=v1.0 ATGCGCGGCGGCCGAAGGGGTCCCGGCGGCGGGAACTGCAGCAGCAACCCCTGCTTGACAATGCACCAGCCTTGGGCTTCTCTTCTCGTCCACGGGATCA AACGCATCGAAGGCCGCTCCTGGCCTGCTCCTCTTCGTGGCCGGTTATGGATACACGCTGCCGGCAAAGTTCCAGATCCAGAGACGATAAAAGCTATGGA GGATTTCTACAAGGAAATTTATGCTCTAGATGGGATTACTGACATCAAGTTTCCTCAACATTACCCTGTTTCAAGGCTCTTAGGGTGTGTCCAAATAGTC GGGTGTCTGAAACGCGATGAGCTAGCAAGTTGGGAGGCTATACGGGAAGGGGTGAGGGTAGAAGCACAAACTGACTTTTGCTGGCTTTGTGAACAGCCAC AGAGGTTGTTGGTTCCATTCGAGATGAGAGGTAATCAAGGTGTTTATAACTTGGAAAGGAAGATGTACGAGTCTGCAGTTCTAGGCGTCGTCCCAGTTGA AGGTCCAATGCCTGTGAAATTTCCTCTTCCGAATCCAAGCATTCCGTTCTCTTTGCGACCTGGTTCCATTGGTTGCTCTCGTGCCCCATCAGAAGTTGAG AAATCGTCAAGACTTATTGCAGCCATTGATTCTGCTCGTGCAGCAGCTACACAGTACACCAAGAAAGTCCAAAACCATGGCACGTCAAATTTCACTGCAA ATTCCAGCAACACGAAACCGTACGAATGGAGAACCAAGTCACTGGTGAAGGCTGGGGCTTCACAGGCTAACTTGCAGGGGAGTCGTAGTAACGAGGAGAC TCGAAACAACACATTGACATAA
AA sequence Show only first row Show all	>Lus10042558 pacid=23181657 polypeptide=Lus10042558 locus=Lus10042558.g ID=Lus10042558.BGIv1.0 annot-version=v1.0 MRGGRRGPGGGNCSSNPCLTMHQPWASLLVHGIKRIEGRSWPAPLRGRLWIHAAGKVPDPETIKAMEDFYKEIYALDGITDIKFPQHYPVSRLLGCVQIV GCLKRDELASWEAIREGVRVEAQTDFCWLCEQPQRLLVPFEMRGNQGVYNLERKMYESAVLGVVPVEGPMPVKFPLPNPSIPFSLRPGSIGCSRAPSEVE KSSRLIAAIDSARAAATQYTKKVQNHGTSNFTANSSNTKPYEWRTKSLVKAGASQANLQGSRSNEETRNNTLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10038368 [exp]	3.9	0.7952
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	5.6	0.8579
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	6.3	0.7943
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	7.5	0.7691
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10020364 [exp]	7.7	0.7769
AT1G02816			Protein of unknown function, D...		Lus10009855 [exp]	9.9	0.7434
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	10.1	0.7890
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	11.0	0.8012
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	11.2	0.7780
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10024274 [exp]	13.7	0.7305

Compare expression of checked genes

Lus10042558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.