Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08650 312 / 3e-107 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylase kinase 1 (.1.2) AT3G04530 296 / 9e-101 ATPPCK2, PEPCK2, PPCK2 phosphoenolpyruvate carboxylase kinase 2 (.1) AT1G50700 189 / 1e-56 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 186 / 5e-55 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04720 183 / 6e-54 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 181 / 7e-53 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G12680 177 / 2e-52 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G61950 177 / 1e-51 CPK19 calcium-dependent protein kinase 19 (.1) AT1G12580 175 / 6e-51 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT5G12480 172 / 5e-50 CPK7 calmodulin-domain protein kinase 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014657 [exp] 365 / 3e-128 AT1G08650 351 / 2e-122 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10011824 [exp] 238 / 4e-79 AT1G08650 227 / 3e-75 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10021190 [exp] 192 / 7e-61 AT3G04530 186 / 1e-58 phosphoenolpyruvate carboxylase kinase 2 (.1) Lus10020046 [exp] 187 / 2e-55 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10006777 [exp] 186 / 3e-55 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10036464 [exp] 182 / 3e-54 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10021531 [exp] 183 / 8e-54 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 182 / 1e-53 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10041132 [exp] 180 / 2e-53 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018100 [exp] 358 / 3e-125 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.013G046100 [exp] 348 / 2e-121 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.010G071400 [exp] 303 / 6e-104 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.008G166500 [exp] 302 / 2e-103 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.005G251500 [exp] 182 / 4e-54 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.002G017000 [exp] 181 / 4e-53 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 177 / 6e-52 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.011G003400 [exp] 176 / 3e-51 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.016G065700 [exp] 176 / 5e-51 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.006G199400 [exp] 174 / 4e-50 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042560 pacid=23181751 polypeptide=Lus10042560 locus=Lus10042560.g ID=Lus10042560.BGIv1.0 annot-version=v1.0 ATGTGCTCTAACCTAAACAGCATCAACAACTATCAGCTCTGCGAAGAAATCGGCCGGGGAAGATTCGGCGTCATCTCCCGCTGCTATTCTCCGACCACCG ACTCCTCCTTCGCCTGCAAGACCATCCACAAATCCTCACTCTCCGACGACCCCACCGACCGCCGTTGCCTCGTCACCGAGCCTCAAATCATGCTCCTCCT CTCCCCTCACCCTCACATCCTCCAGATCCACGACGCCTTCGACTCCGACGACTCCCTCACATTGATCCTCGACCTCTGCGACCCGCGCACCCTCCACGAC GTCGTCGTCGCCATCAACGGCGGAGGCTTATCGGAGGCGCGATCGGCCTCCGTCATGCGACAGCTGCTCGAGGCGGTGGCACATTGTCATAAATTTGGCG TGGTCCACCGTGATGTCAAGCCGGAGAACGTTCTGTTCGACTCGATGGACCGGGTCAAGCTGGCGGACTTCGGATCGGCTGAGTGGGTCGTCGGGGGCGG GTCGATGCTGAGCGGGGTGGTGGGGACGCCCTACTACGTGGCGCCAGAAGTGCTGACGGGGAGGGAGTACGGAGAGAAGGTGGACGTTTGGAGCGCGGGG GTGGTTATGTACGTGATGTTGGCAGGGTTCCCGCCGTTTTTCGGGGATGACGTGGAGGAGACATTCGAGGCGGTGATTCGTGGCAACTTGAGGTTCCCGG TGAAGGCGTTTCGGAACGTGTCGGGTGGGGCGAAGGACTTGTTGAGGAAGTTGATATGTAGGGACGTTTCCAGAAGGTTGTCAGCGGAACAAGCTCTCCG GCATGAATGGATCTTGAAGGGCGGGGAAGCGTCTTGA
AA sequence Show only first row Show all	>Lus10042560 pacid=23181751 polypeptide=Lus10042560 locus=Lus10042560.g ID=Lus10042560.BGIv1.0 annot-version=v1.0 MCSNLNSINNYQLCEEIGRGRFGVISRCYSPTTDSSFACKTIHKSSLSDDPTDRRCLVTEPQIMLLLSPHPHILQIHDAFDSDDSLTLILDLCDPRTLHD VVVAINGGGLSEARSASVMRQLLEAVAHCHKFGVVHRDVKPENVLFDSMDRVKLADFGSAEWVVGGGSMLSGVVGTPYYVAPEVLTGREYGEKVDVWSAG VVMYVMLAGFPPFFGDDVEETFEAVIRGNLRFPVKAFRNVSGGAKDLLRKLICRDVSRRLSAEQALRHEWILKGGEAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10042560 [exp]	0	1
AT5G42850			Thioredoxin superfamily protei...		Lus10023026 [exp]	4.6	0.7069
AT5G36930			Disease resistance protein (TI...		Lus10026845 [exp]	10.3	0.7208
					Lus10029472 [exp]	12.4	0.7019
AT1G65690			Late embryogenesis abundant (L...		Lus10031635 [exp]	12.8	0.5563
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10025453 [exp]	15.9	0.7141
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	24.5	0.7029
AT3G49601			unknown protein		Lus10034691 [exp]	30.5	0.6889
					Lus10036060 [exp]	31.9	0.6840
AT3G25910			Protein of unknown function (D...		Lus10026800 [exp]	48.5	0.6509
AT5G27700			Ribosomal protein S21e (.1)		Lus10010971 [exp]	54.6	0.6367

Compare expression of checked genes

Lus10042560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.