Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036252 [exp] 119 / 4e-30 ND / Lus10003602 [exp] 52 / 6e-07 ND / Lus10007786 [exp] 50 / 2e-06 ND / Lus10002965 [exp] 46 / 3e-05 ND / Lus10018794 [exp] 42 / 0.0007 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042562 pacid=23181992 polypeptide=Lus10042562 locus=Lus10042562.g ID=Lus10042562.BGIv1.0 annot-version=v1.0 ATGGATGATGGGCAGAGGGTACTCTTAAAGGAGAGTGATGTGGAACGGATTTACGGGCGGCCTCGTGAGAAGGATCCAATTATGGTAGAAGAGTTTTCCG GCGAAGATCTGATGGCATGTTCTACAAAAATTGGGCTTCGTCCATCGCAAAAGCATCATGTTGAAGCAAAGCAGATCACTGATCTAATTAAGAAGGTAGA TGGTACTGGGCTCACCATCCTTTTTGCAATGTATGTCATTGCTGTACTTTTTACTGGCAAGCTAGATCCGACTGTGCATGTGAAGTATTTGAAGTTGGTT TATGGCAAGGACTCGAAGCCGCTTTCGTCATACAATTGGTGTGCGCTTATACTTGATATACTAAAGGCCAATGGGATGAAGTTGGGCCAGATAACAAATG TCGATATTGACATCAACTTGCTAGTTCTATTTTACCTAGATCGAGTTGGGTTTTATGGAGGTTATGTTCTGGAGAACTGTCCAACTGCACAGAACTGGGA CTACTTTCAGAAAATGCGACGTATGAAGATGGTACTAGAAAAATTTGGTGATTATGGGTCGACGAAGGTGTTACCATTCAAACTTGACGATGAGCCCAAA GTTATGGATCATCCAACACTGAAAGATAATGATCAGCATATCAGTTCTGCAACTGCTCAGTCGATGATAGATGATGTCCTGACAAAGATGAAGTTGTTAG GGGATTTCGTTACCAGTGATGAAGATAAAGGTCTGAGAGATGATGGTATGCCTGATGGAGGTAAGGATGAATTGTTTGGTAAAGGAGTTGGCGATGATGG ACTGATGGAGGTAAGGATGAAGAAACTGATAAAGGTGCAAAAGTTGAAGCGTGTGACGTTACAGTATATCAACGAAGGCCACAACGAGACAAGAAAAAGG GGGAAGTATGATGATTCTCCTTGGCATCTACCAAACAAGAAGAAGAAGAAGGGTGATGCAGTGGAGCTTCCAGCTGCAGTTCAGGGCGTGCAAACCCAAA TGGTGCCTGCTACTGACGGTGCTGAAGCTGGTGCCCAAGTGAAAATAGTTTCTAGTATTGAGGTAGTTGTTGTTGGGAATCAAACACAAGAGCTGATTGA GCACGTTGAGAGGATTGAGGTTGAAAGGCTTGCAACTTATCGTTTGAGGGAGTTGTTGATTGCGTATTGTTGGCCCAACATGGTCTTGGATAGGGACGAT ATTCTGTTCAAGAGCAGCAAGCTTGGGGGAAAGCTAACTCGCGAGGATTTGGTGTCTGTTAGTCCAAACGAGTGCATAACCAACTACTTCTTTGACGATG GTGTAGTTGCAGGTTGTGTGAAGCGCAAAAGACCTGAGCCATGTGACTTTGAGTTGATCGGGGAAATATCTGAGTTTTTCGACAAGGATTCATGTTTAAA TCGCAGTGTTGTTCTAAAGGAAGAATACATATGGATGTAG
AA sequence Show only first row Show all	>Lus10042562 pacid=23181992 polypeptide=Lus10042562 locus=Lus10042562.g ID=Lus10042562.BGIv1.0 annot-version=v1.0 MDDGQRVLLKESDVERIYGRPREKDPIMVEEFSGEDLMACSTKIGLRPSQKHHVEAKQITDLIKKVDGTGLTILFAMYVIAVLFTGKLDPTVHVKYLKLV YGKDSKPLSSYNWCALILDILKANGMKLGQITNVDIDINLLVLFYLDRVGFYGGYVLENCPTAQNWDYFQKMRRMKMVLEKFGDYGSTKVLPFKLDDEPK VMDHPTLKDNDQHISSATAQSMIDDVLTKMKLLGDFVTSDEDKGLRDDGMPDGGKDELFGKGVGDDGLMEVRMKKLIKVQKLKRVTLQYINEGHNETRKR GKYDDSPWHLPNKKKKKGDAVELPAAVQGVQTQMVPATDGAEAGAQVKIVSSIEVVVVGNQTQELIEHVERIEVERLATYRLRELLIAYCWPNMVLDRDD ILFKSSKLGGKLTREDLVSVSPNECITNYFFDDGVVAGCVKRKRPEPCDFELIGEISEFFDKDSCLNRSVVLKEEYIWM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042562 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	1.0	0.9450
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	3.5	0.8960
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	5.5	0.9032
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	6.0	0.8906
AT5G10320			unknown protein		Lus10000634 [exp]	6.5	0.8363
AT2G17787			unknown protein		Lus10017274 [exp]	6.6	0.8954
AT2G17787			unknown protein		Lus10013567 [exp]	8.7	0.8907
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	8.9	0.8885
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	9.2	0.8571
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10005004 [exp]	9.7	0.8623

Compare expression of checked genes

Lus10042562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.