Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042563 pacid=23181697 polypeptide=Lus10042563 locus=Lus10042563.g ID=Lus10042563.BGIv1.0 annot-version=v1.0 ATGTTGATTCGGCGACGGGAGCTCCTCCCTCCTTCTTTGTCGATGTTAGCCCTCCTCTCCTCCTTCTTTTGGTCTCTTCCGGCAACGCAACTGATCTATT TCGGTGACGGCAACGCTGCAGCTCGAACCTCATCCTTGTCTAAGCAGCGCACTGCTGATGCTGGTAAAGTGGTTGTGAGCCAACTCGTGGTAGGTGCAGA GAAAGAAGCAAAGAAGCTTTCTCCGAAGAAGAAGGGGCTTGGTCTTTCTGCTACGTTGGAGCCAAATCATGAAGAGAAGTGTGTGCCTCCATCTGCTTCT CAACCTTCAAAAAGGCAAAGCAATACTGGTGTTGGTAAACTGGTTGCAAGCCAACCTGTTGTAGGAGGAGAGCAAGAAGCAAAGAAGCTTCCTCATAAGA AGAAGGGGCTTGTCCTATTGCTGTTTCGTAGCCAAATCCTGACATGGAGAGTGTGCCTCAATCTACTTCTCAGCCTTCAAATAGGAAGCACAAGACCACT ACTAGTAAACTGGTTGCACGCCAATCTGTGGTAG
AA sequence Show only first row Show all	>Lus10042563 pacid=23181697 polypeptide=Lus10042563 locus=Lus10042563.g ID=Lus10042563.BGIv1.0 annot-version=v1.0 MLIRRRELLPPSLSMLALLSSFFWSLPATQLIYFGDGNAAARTSSLSKQRTADAGKVVVSQLVVGAEKEAKKLSPKKKGLGLSATLEPNHEEKCVPPSAS QPSKRQSNTGVGKLVASQPVVGGEQEAKKLPHKKKGLVLLLFRSQILTWRVCLNLLLSLQIGSTRPLLVNWLHANLW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042563 [exp]	0	1
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10042865 [exp]	1.0	0.8966
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	2.4	0.8828
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	2.8	0.8464
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	3.9	0.8822
AT1G56130			Leucine-rich repeat transmembr...		Lus10005375 [exp]	4.6	0.8013
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	8.4	0.8296
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	10.2	0.8213
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	12.0	0.7996
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	12.0	0.8130
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	13.3	0.8009

Compare expression of checked genes

Lus10042563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.