Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08640 274 / 1e-90 CJD1 Chloroplast J-like domain 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022022 [exp] 519 / 0 AT1G08640 345 / 1e-119 Chloroplast J-like domain 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G046200 [exp] 325 / 4e-111 AT1G08640 358 / 5e-125 Chloroplast J-like domain 1 (.1) Potri.019G018300 [exp] 321 / 1e-109 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10042564 pacid=23182005 polypeptide=Lus10042564 locus=Lus10042564.g ID=Lus10042564.BGIv1.0 annot-version=v1.0 ATGGCTTTCGCAATATCGAATGCCTTTACCTGCCCAAAACCCCGAATTCCACCAAGCAATTGGAACCTCAGAACTCGATCCCCGAGATTGCAGCCTTCCT TCGTCAGGTTCTCTTCTAGAGTTCCGTTGAATGGAAAATTTGTATGCTTGGCTGCTTCTGCTGCAGGGAGTTCTAGCCCAGACAATGATTTGAACCCTTA CGAGGTCCTTGGTGTGAATCCATTTTCTGGGTTTGAGGCGGTCAAGAAAGCTCATAAGAAGAAGCGCCAGGAAGCCGAGAGTATGGGTGATGAAACCACT GTTGCTCAGCTTGACAAGGCATATGATAAGCTGATGATGGCGCAACTGAAAAATCGAAAGGAAGGTGTGGCATATGGTTCATTCAAGTACTTACAATGTT TGCAGAGAAAAGTAAAACAAATAGAGTTTAGCTGTTATCTGCATTTCTGCATGCTTGTGCTTTCACGTTTTGATATCAATATCGGCAGAGTCCGGGGACT TGTTTTAGGCTCATTATTTACCATCGACATCTTGCAGGTCTCAAAGGACGTAAAATATGCTGACAAGATGCCAATTCTACCGTGGGGACCAAGGTTTACC AAGTCCGGCCAAAATGATATGCGAATCAACTTGGCTATATCTGCCGTATTTACTAATGCTTTGCCGGCTATCAGTCCGCTCTCCTGTTCTCACACCGTCC TCCTTCTGCAGACAGCTTGGATTGCAATCAAACGCAATGCCGAATACAAACCTCTGCAGTTTTTGGCATTTGCATTTGTATACCGCCTTTTTGAGAAGTT AAAGGCAACTGAACCGGCTGTTAAACCAACACTTACAGAAGACGGTGAGGATGAGGGCAGAGGACTACGAATGGGAAAGCGGCTTCTTCGATCACTAGCC CTATCTTTCGGCTGCATTGCCTTTGCTTCTCTGGCCTACACTTGTATACTGAATGTGATCGAATACACTGGGGGTTTCATACCTATGTTGCTATACAACA ATCAGGAATTGATAATCACTGCTTCATCAGCAATCTGCTTATACATTTTGGCATCGTACTATCGATAA
AA sequence Show only first row Show all	>Lus10042564 pacid=23182005 polypeptide=Lus10042564 locus=Lus10042564.g ID=Lus10042564.BGIv1.0 annot-version=v1.0 MAFAISNAFTCPKPRIPPSNWNLRTRSPRLQPSFVRFSSRVPLNGKFVCLAASAAGSSSPDNDLNPYEVLGVNPFSGFEAVKKAHKKKRQEAESMGDETT VAQLDKAYDKLMMAQLKNRKEGVAYGSFKYLQCLQRKVKQIEFSCYLHFCMLVLSRFDINIGRVRGLVLGSLFTIDILQVSKDVKYADKMPILPWGPRFT KSGQNDMRINLAISAVFTNALPAISPLSCSHTVLLLQTAWIAIKRNAEYKPLQFLAFAFVYRLFEKLKATEPAVKPTLTEDGEDEGRGLRMGKRLLRSLA LSFGCIAFASLAYTCILNVIEYTGGFIPMLLYNNQELIITASSAICLYILASYYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	0	1
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10028478 [exp]	1.4	0.8498
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	3.9	0.8003
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10022022 [exp]	4.2	0.8456
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10003741 [exp]	10.8	0.8108
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	11.6	0.7919
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	12.2	0.7606
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	12.6	0.8182
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	13.9	0.7933
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10000050 [exp]	15.6	0.7704
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	16.9	0.7885

Compare expression of checked genes

Lus10042564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.