Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08610 502 / 1e-173 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 302 / 3e-95 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 247 / 3e-74 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74580 223 / 3e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 221 / 3e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 214 / 1e-61 RPF2 rna processing factor 2 (.1) AT1G62590 213 / 3e-61 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G53700 214 / 1e-60 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 213 / 2e-60 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 210 / 2e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022025 [exp] 985 / 0 AT1G08610 507 / 2e-175 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 213 / 1e-60 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 210 / 2e-59 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 210 / 4e-59 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 209 / 5e-59 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 208 / 1e-58 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 207 / 2e-58 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 207 / 4e-58 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 207 / 2e-57 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019200 [exp] 588 / 0 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 300 / 1e-94 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G217600 [exp] 238 / 3e-69 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019300 [exp] 232 / 1e-68 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 233 / 2e-68 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G047000 [exp] 231 / 2e-68 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G457300 [exp] 228 / 1e-67 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 231 / 5e-67 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G144300 [exp] 224 / 5e-66 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 223 / 2e-65 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042567 pacid=23181654 polypeptide=Lus10042567 locus=Lus10042567.g ID=Lus10042567.BGIv1.0 annot-version=v1.0 ATGGGGCATACCGTTTCCCCGCAGAAGTTTCTTGCTGAATTTGGTGCTGTGAACCATCTCTCTACAACAAAGCTATCATTGCTGCATCATCTTAAATGCT CCCAACTATGCCTACGCCAGGAAGCTATCATTGCTAAAAGTCTTGTCATTGATGAGTGTGGAATTGACCAGAACTCCACCGAGCACAGGATCATGAAGAA GAAGAAGAAGAATAGATCATTGTTATCATCTTCAAGCGATGGATTTAACGATGAGGCAACAAACAATGAGATCCTCGAGTCCTTGTGCAGAAGAGGAAGG TTAACTGATGCAACAAAGCTGATAAAAACCATGGGACAGAGAAGACAGATCCCTCTCTATTCATGCTGCATCAACTTAATCAGGGGTCTCGCTCGAAACC AACGGATAAACGAAGCTGTCAAAATCCTCGAAGTCGTGGTATCATATGGCGCTGTCCCTGATGCTATTACATACAACATGATGATTGCTGGTTTCTGCAA ACGAGGACTCGTAAGTTCAGCAGTCCACCTTGTGCAAGACATGAGCTTAAGTGGTTGTCCTCCGGATGTGATCACTTACAATACGGTCATTCGAGCCATG TTTCGGATGGGGGATTTCGAAGAAGCCATCACTTTCTGGAAGGAGCAACTAATGCGAGGCGACCCTCCTTACTTGCTGAGCTACACGGTTCTCCTGGAGC TAGTTTGCAAGCATTGTGGGGCTATGCGTGCTGTGCAGGTATTGGAAGACATGGCCATGGAAGATTGCTTCCCCGATCTCGTTGCGTACAATTCGTTAAT GAATCTTACTAGCAAACAAGGGAAGTTCGAAGATGCGACGTTAATACTGAGCACCATTTTGTCAAATGGAATGGAACCGGATGATTGGGTTTACAACACA CTCATCCACTCCCTCTCTAGCTTTGGTTACTGGGAAGAAGTTCGTGAGATCCTCGAACTCATGAAGAACAGTTCATATCATCCTACTGTGATTACCTACA ATCTCTTAATCAGTGGGTTGTGCAAGTGTGGAGATCTTTCCCATGCCATTGACTTCTTTGTTCTTATGTTGGACCGAAATTGCTCACCTGACATTGTAAC GTATAACATTCTGTTAGGTGGTTTATGCAGAGAAGGAATGGTGGATGAGGCTGTTCAATTACTCGACATTTTAGTTCGTAATAGTAGTAGCTGTCGGCCT GGATTGATAAGTTACAACATTGTTATAGATGGACTCGGTCGAAGGGGCTACACAGACAAAGCATACGAGTTATACATTCAGATGGTGGAAAATGGGATCT CGCCGGATGGTATAACTCACCGATGTCTTGCCTGGGCGTTTTGCTGGGCGGATCGAGTTGAGGAAGCTGTGGAAATATTGAAGGAGATGGTGAAGAGGGA TCAGCGTGTCAATGATGGTGTTTTCAAATCGGTGGTCAAGGGATTGTGTAGAAAGCAAAAAGTGGGCACAGCAATACAAGTTTTGGAAGTGATGATCTGT GGAGGGTACAAGCCGGATGAGGATGTTTATGATGCTTTGATTAATGGTGTTGCGAAGTCTGGTATGATTCATAAGGCTGATGAATTGCGTAAGAGACTGC GGAAAATGGGAGTGTTGGCGACATCATTGTCCCTAAGCAAGAATCTTAACTGA
AA sequence Show only first row Show all	>Lus10042567 pacid=23181654 polypeptide=Lus10042567 locus=Lus10042567.g ID=Lus10042567.BGIv1.0 annot-version=v1.0 MGHTVSPQKFLAEFGAVNHLSTTKLSLLHHLKCSQLCLRQEAIIAKSLVIDECGIDQNSTEHRIMKKKKKNRSLLSSSSDGFNDEATNNEILESLCRRGR LTDATKLIKTMGQRRQIPLYSCCINLIRGLARNQRINEAVKILEVVVSYGAVPDAITYNMMIAGFCKRGLVSSAVHLVQDMSLSGCPPDVITYNTVIRAM FRMGDFEEAITFWKEQLMRGDPPYLLSYTVLLELVCKHCGAMRAVQVLEDMAMEDCFPDLVAYNSLMNLTSKQGKFEDATLILSTILSNGMEPDDWVYNT LIHSLSSFGYWEEVREILELMKNSSYHPTVITYNLLISGLCKCGDLSHAIDFFVLMLDRNCSPDIVTYNILLGGLCREGMVDEAVQLLDILVRNSSSCRP GLISYNIVIDGLGRRGYTDKAYELYIQMVENGISPDGITHRCLAWAFCWADRVEEAVEILKEMVKRDQRVNDGVFKSVVKGLCRKQKVGTAIQVLEVMIC GGYKPDEDVYDALINGVAKSGMIHKADELRKRLRKMGVLATSLSLSKNLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	0	1
AT4G37190			unknown protein		Lus10001001 [exp]	3.0	0.8851
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	6.1	0.8990
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10009479 [exp]	8.2	0.8538
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	11.2	0.8770
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10029583 [exp]	13.4	0.8828
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	14.4	0.8860
AT1G56350			Peptide chain release factor 2...		Lus10031411 [exp]	15.7	0.8223
AT1G60640			unknown protein		Lus10033578 [exp]	16.5	0.8639
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	19.4	0.8597
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10038778 [exp]	20.0	0.8747

Compare expression of checked genes

Lus10042567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.