Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10095 358 / 2e-121 Protein prenylyltransferase superfamily protein (.1) AT4G24490 54 / 2e-07 ATRGTA1 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) AT5G41820 47 / 2e-05 ATRGTA2 RAB geranylgeranyl transferase alpha subunit 2 (.1) AT3G59380 44 / 0.0002 FTA, PLP, ATFTA, PFT/PGGT-IALPHA PLURIPETALA, farnesyltransferase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022027 [exp] 697 / 0 AT1G10095 320 / 3e-106 Protein prenylyltransferase superfamily protein (.1) Lus10031441 [exp] 56 / 4e-08 AT4G24490 667 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10001518 [exp] 55 / 7e-08 AT4G24490 630 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10022404 [exp] 55 / 1e-07 AT4G24490 656 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10015954 [exp] 52 / 5e-07 AT3G59380 414 / 1e-145 PLURIPETALA, farnesyltransferase A (.1) Lus10000763 [exp] 50 / 2e-06 AT3G59380 421 / 1e-147 PLURIPETALA, farnesyltransferase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047100 [exp] 446 / 3e-155 AT1G10095 430 / 4e-149 Protein prenylyltransferase superfamily protein (.1) Potri.007G127500 [exp] 52 / 3e-07 AT3G59380 433 / 2e-153 PLURIPETALA, farnesyltransferase A (.1) Potri.006G225100 [exp] 52 / 4e-07 AT4G24490 659 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01239 [flax] [poplar] PPTA Protein prenyltransferase alpha subunit repeat
Representative CDS sequence Show only first row Show all	>Lus10042569 pacid=23181951 polypeptide=Lus10042569 locus=Lus10042569.g ID=Lus10042569.BGIv1.0 annot-version=v1.0 ATGGCTGAAAGTATGATTCAGGGCGTACCCTTGGCCGATCTGCTAAATCAATTCGAGCGAATCCTCGATGAGGATCCCCTCATCAATGAAGTAGGGTTCA TTCACCCTTCGCAACTTGCTGCCTTGGGAAAACGAGCTGAAACCGACAGCTCACAATCGCAGAGCTCGAGTTCGTTGGATCGCGGAGATGACAATTTTTG GATTCAAAATCACAAACTGGGCATTTCCTCAGATGTTCTTCTACAATTGTACGCAGCTGCCAGGAAGGAATTCATGAATGCGGTCGTAGAATACAAGAAA CTTGGGGATCCATCTCATCCATCTACTGAAGCTCTTGAAACCGCGGTCATGAAGCACAGCAAAGCACTTCTATTGTTGAGCCCTGATTTTGGGACTGCTT GGAATTCCAGAAAGTTAATTGCATCAAAGAAGCAGCAGACGTCAATGTTCAACGATGAACTCCAGTTGTCTGCCCTTGTCCTTTCATATTCGCCCAAGAG TGAGCAAGCCTGGTGCCATAGGAGGTGGGTTATCAAGAATCTTGCTGCAAAATGTTCAACTTTACCAGAGATTCTGGAGGAGGAATCTGACCTGGTAGAA AAGATAGCCGAGAGATCCAAGATGAATTATCGTGCATGGAATCATCGCTGTTGGTTAGTTTCGTACATGGACAGAGAACAAGTTCTACAACAACTGAAGA AATCCAAAACCTGGGCTGCGTTAAATGTTTCTGATAATTCTTGCTTCCACTATCGCATGCGGCTGATAATCAGAATTTTAGAGGAATGCTGCCGTAAGCA AGAAGAGGGATGCTGTGATTCTTGTGTTGAAGTTTACTGGCTTTGGCAGGAAGAGCTTGAATGGAACGAAGAACTAATAAAGCGTTATTTAGGAAGGGAG GCTCTGTGGCTCTACCGTCGCTTTCTCTCCTTGTTATGGATAAGACATTTTGCATGCGATGTCAACGACGTATCTTCCCCGCAGAAAAGCAAATCCAGCA TCCAAGTCAATGTCAGTATCTTTCTGGATAAGGAGTTACTCCTCGTCAATTCTTGTTCGGAAGTGCTCGATGACGAGTTTGATGATTATGAAGCCCAAGC AATTTGTTCCGCTTTCTATTTGTTATGGTTGACAAAGCAAATCCCGGAAACCAGAAAGTTTGAAGTCAGAGATAAGATCGACAACGAACAGCTCAACACG ATGCTGAAATTAGTAGCTCTGAAGGGACCTCCATTTGGGGCTATATGA
AA sequence Show only first row Show all	>Lus10042569 pacid=23181951 polypeptide=Lus10042569 locus=Lus10042569.g ID=Lus10042569.BGIv1.0 annot-version=v1.0 MAESMIQGVPLADLLNQFERILDEDPLINEVGFIHPSQLAALGKRAETDSSQSQSSSSLDRGDDNFWIQNHKLGISSDVLLQLYAAARKEFMNAVVEYKK LGDPSHPSTEALETAVMKHSKALLLLSPDFGTAWNSRKLIASKKQQTSMFNDELQLSALVLSYSPKSEQAWCHRRWVIKNLAAKCSTLPEILEEESDLVE KIAERSKMNYRAWNHRCWLVSYMDREQVLQQLKKSKTWAALNVSDNSCFHYRMRLIIRILEECCRKQEEGCCDSCVEVYWLWQEELEWNEELIKRYLGRE ALWLYRRFLSLLWIRHFACDVNDVSSPQKSKSSIQVNVSIFLDKELLLVNSCSEVLDDEFDDYEAQAICSAFYLLWLTKQIPETRKFEVRDKIDNEQLNT MLKLVALKGPPFGAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	0	1
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	1.7	0.9351
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10006727 [exp]	2.0	0.9332
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	2.0	0.9512
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	3.5	0.9357
AT5G22050			Protein kinase superfamily pro...		Lus10004110 [exp]	7.9	0.9257
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	9.8	0.9219
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	10.4	0.9241
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	12.3	0.8734
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	12.8	0.9022
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	12.8	0.9222

Compare expression of checked genes

Lus10042569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.