Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46600 159 / 6e-44 Aluminium activated malate transporter family protein (.1) AT4G00910 157 / 2e-43 Aluminium activated malate transporter family protein (.1) AT5G46610 156 / 4e-43 Aluminium activated malate transporter family protein (.1.2.3) AT4G17970 154 / 8e-42 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT1G08440 137 / 7e-36 Aluminium activated malate transporter family protein (.1) AT3G11680 136 / 1e-35 Aluminium activated malate transporter family protein (.1) AT1G08430 131 / 8e-34 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT2G27240 119 / 2e-29 Aluminium activated malate transporter family protein (.1) AT3G18440 115 / 8e-28 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G68600 107 / 4e-25 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022030 [exp] 554 / 0 AT5G46600 237 / 2e-72 Aluminium activated malate transporter family protein (.1) Lus10030975 [exp] 163 / 4e-45 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10001849 [exp] 156 / 3e-43 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 156 / 1e-42 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 152 / 4e-41 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013577 [exp] 142 / 1e-37 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 139 / 1e-36 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 125 / 1e-31 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 125 / 1e-31 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208500 [exp] 319 / 2e-106 AT4G17970 228 / 4e-69 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.002G054300 [exp] 319 / 2e-106 AT5G46600 252 / 3e-78 Aluminium activated malate transporter family protein (.1) Potri.001G085900 [exp] 175 / 4e-50 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 168 / 2e-47 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 167 / 4e-47 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G144300 [exp] 157 / 5e-43 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.016G070100 [exp] 144 / 8e-39 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.014G101200 [exp] 143 / 1e-38 AT4G00910 374 / 9e-126 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 143 / 3e-38 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 135 / 1e-35 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10042571 pacid=23181998 polypeptide=Lus10042571 locus=Lus10042571.g ID=Lus10042571.BGIv1.0 annot-version=v1.0 ATGGAGTCGTCGGCGGCCGTAATAGACATCAACGATAACGTAGCAACGAAAGAGAAGATCATGATGGAAGAGGAGGAAGCGGCGGAGAATGGCGGCGGCG GAGTGGGGATGAAGATGGTCAGGAAATGGGTGCACAGTGTGAAAGTAGGAGTGGCGGTGGTGATTGTTTCACTACTCTACTTCTTGGACCCTCTTTACAA GGAAGTCGACGACGACAATGCCATTTGGGCTATTATGACTGTTGTCGTCATCTTCGAGTTCCATGCTGGTGCGTACGTGCTAGCTAGCTGCTACTATTTT CACTGGAAGAAAATGCAGTTTTACGGCGCGACGTACTACAGACAGATACAGAGGAAGAAGTTGTTCGACTACGGGGCGAATATATTCATCCTGACGTTCA GTCTGGTGGCTGTCTCGGGGCTTCGTATCGAGAACGTGATAGAGATAGCGAGGGAGAGACTGCTGATGATACTGTTGGGATTCATGACCTGTGTTTTCAC AAGCTTGTTCTTCTTCCCCATATGGGCTAGCGACGAGCTCCACTCTTCCTTGTCTTCGAGGTTCCATCAACTTGCTGCTTCCCTCCAAGGGTGTGTGGAG GAATACTTCAGAATGGAAGAGAAGACTAATGATGCAGACGAGTTGAAGCAGCAACCAGTTATCGACGAGTGTTTCAAGAGTTGTCAGGCCGTCCTGCTGG CCAAGTCTACAGATGATTCTTTGGTAATTGCAGCGAGATGGGAGCCATGGCATGGTAAATTCGGGCTGTCATATCCATGGGATAGATACAATCAAACTTC CCAAATTCTCAGTGACTTGGCCGCATCCATCCTTTCCCTCAAATTCTGTCTCAAATCTCCTAGACAGCCGTGCGAAGCTGCTGCAGCGTCACTGGCGTGG AGCCTGGGAGAGCTGGGAGACAGCATCCGAACAATGAGGAGATGTAATACGGAAGCTTCCATTGTGCCCGAGTTGAAATCTGCCAGGCTAGAGCTCAGCA GGGTCGTCGTTACGACACCCTTTAATCCAGAGGCTCTTGGGATGGCGACCTTCGTGTTTAAGTTGACTGAGATGGTTGAGGTTTTGGAGGAGCTGGCTAA GCAAGTTGAGGAGCTCGCCCAAACAGCTGGTTTCCATGAAACCTGA
AA sequence Show only first row Show all	>Lus10042571 pacid=23181998 polypeptide=Lus10042571 locus=Lus10042571.g ID=Lus10042571.BGIv1.0 annot-version=v1.0 MESSAAVIDINDNVATKEKIMMEEEEAAENGGGGVGMKMVRKWVHSVKVGVAVVIVSLLYFLDPLYKEVDDDNAIWAIMTVVVIFEFHAGAYVLASCYYF HWKKMQFYGATYYRQIQRKKLFDYGANIFILTFSLVAVSGLRIENVIEIARERLLMILLGFMTCVFTSLFFFPIWASDELHSSLSSRFHQLAASLQGCVE EYFRMEEKTNDADELKQQPVIDECFKSCQAVLLAKSTDDSLVIAARWEPWHGKFGLSYPWDRYNQTSQILSDLAASILSLKFCLKSPRQPCEAAAASLAW SLGELGDSIRTMRRCNTEASIVPELKSARLELSRVVVTTPFNPEALGMATFVFKLTEMVEVLEELAKQVEELAQTAGFHET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46600			Aluminium activated malate tra...		Lus10042571 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10022349 [exp]	4.5	0.9009
AT5G46600			Aluminium activated malate tra...		Lus10022030 [exp]	4.9	0.8821
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	7.3	0.8680
					Lus10002866 [exp]	8.5	0.8585
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029452 [exp]	10.9	0.8885
AT1G73210			Protein of unknown function (D...		Lus10038327 [exp]	11.1	0.8074
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	12.2	0.8759
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	16.2	0.8259
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	21.3	0.8651
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	24.1	0.8500

Compare expression of checked genes

Lus10042571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.