Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02830 62 / 4e-12 unknown protein AT3G54000 53 / 3e-08 unknown protein AT5G59050 44 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014664 [exp] 87 / 5e-21 AT4G02830 74 / 2e-16 unknown protein Lus10021105 [exp] 59 / 5e-10 AT3G54000 90 / 8e-20 unknown protein Lus10001433 [exp] 53 / 3e-08 AT5G59050 80 / 9e-17 unknown protein Lus10004675 [exp] 51 / 2e-07 AT2G39870 100 / 1e-23 unknown protein Lus10040247 [exp] 50 / 2e-07 AT2G39870 100 / 9e-24 unknown protein Lus10001626 [exp] 50 / 3e-07 AT5G59050 77 / 4e-16 unknown protein Lus10015768 [exp] 41 / 0.0002 ND 43 / 8e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208800 [exp] 115 / 2e-32 AT4G02830 99 / 4e-26 unknown protein Potri.002G053700 [exp] 100 / 3e-26 AT4G02830 99 / 4e-26 unknown protein Potri.010G195800 [exp] 69 / 1e-13 AT3G54000 94 / 3e-21 unknown protein Potri.006G093000 [exp] 64 / 9e-12 AT3G54000 79 / 9e-16 unknown protein Potri.009G038600 [exp] 61 / 7e-11 AT5G59050 112 / 3e-28 unknown protein Potri.016G105000 [exp] 60 / 1e-10 AT3G54000 73 / 4e-14 unknown protein Potri.008G062200 [exp] 58 / 4e-10 AT2G39870 90 / 9e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042573 pacid=23181898 polypeptide=Lus10042573 locus=Lus10042573.g ID=Lus10042573.BGIv1.0 annot-version=v1.0 ATGGCCGAAAAACACGATAACCAACAGCAACACCATTCCTGGAATATTCCTTCTCATCATCCTCTTCACAAGGCCAAGCCGGACGACGCCGTATTCCGAA ATCAGTACGGCCGCCAGAAGAAGGTGCAATATAGTACTAGTGTTATTGACGACACAAAAACGCCCCACCATTACCAACCGCCGTTGTGGCCGAAAACCGG CGGCAGCCAGAAGAAGAATCATCATCATCATCATCATCCGGCTAACAATTGGGTAGGATCCGGAGGAGGAATGAGAGCCATTTTTCTTGATTCGGGCCAA AAGCCATCAACTGGTACAGGCGTTTTCCTTCCTAAACGCACCAACAACAACTCGTCAAAATCAGGTTGCTCCCCTGTTTTACTCCCTGCACGAGTTGTTC AAGCGCTCAACCTTAATGTCAACGAGTTAGGCCGCCTGCAACTCACTCGACGACGATGTCGATCAGATGCCGAAAACGTCTCAAATACAGGACACTGCAA CAGTACAAATAGTACAACTCCGTCAACAAGAAGTAGCATCGACATTATTGAGCTCCACAATGAAAATGCTCCCCCTGAATTAATCTTCCTCCCAAAAGAA TGGACTTATTAG
AA sequence Show only first row Show all	>Lus10042573 pacid=23181898 polypeptide=Lus10042573 locus=Lus10042573.g ID=Lus10042573.BGIv1.0 annot-version=v1.0 MAEKHDNQQQHHSWNIPSHHPLHKAKPDDAVFRNQYGRQKKVQYSTSVIDDTKTPHHYQPPLWPKTGGSQKKNHHHHHHPANNWVGSGGGMRAIFLDSGQ KPSTGTGVFLPKRTNNNSSKSGCSPVLLPARVVQALNLNVNELGRLQLTRRRCRSDAENVSNTGHCNSTNSTTPSTRSSIDIIELHNENAPPELIFLPKE WTY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02830			unknown protein		Lus10042573 [exp]	0	1
					Lus10021373 [exp]	1.4	0.9751
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	2.2	0.9754
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	3.5	0.9715
					Lus10034812 [exp]	5.0	0.9632
					Lus10031407 [exp]	5.1	0.9502
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	5.3	0.9706
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10007906 [exp]	5.5	0.9608
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	6.9	0.9434
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	7.0	0.9605
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	7.5	0.9603

Compare expression of checked genes

Lus10042573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.