Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02820 558 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02150 275 / 6e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 258 / 1e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 252 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 233 / 2e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G01990 229 / 7e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 225 / 3e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 221 / 2e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 203 / 6e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 176 / 4e-48 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022033 [exp] 818 / 0 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013047 [exp] 275 / 2e-86 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 266 / 1e-82 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008724 [exp] 266 / 2e-82 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 248 / 2e-75 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 244 / 8e-74 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 231 / 4e-69 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004173 [exp] 223 / 3e-67 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 216 / 7e-64 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208900 [exp] 620 / 0 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G050300 [exp] 288 / 8e-91 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 271 / 3e-84 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 269 / 8e-84 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G160100 [exp] 266 / 2e-82 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 265 / 2e-82 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 249 / 4e-76 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 241 / 2e-73 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 233 / 3e-70 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 224 / 8e-67 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042574 pacid=23181941 polypeptide=Lus10042574 locus=Lus10042574.g ID=Lus10042574.BGIv1.0 annot-version=v1.0 ATGCTTCTGCAACGGGCGACGTCCACCGTAAGGGCAATAGCTGCTCCCACCGTAGGGGCAATAGCTGCCGTCACGGCGCGGCGGTTAACGACGGAGGTGG CGGCGGAGGAAAAGATTGTTGCGGCGGTGTCTGAAGGAGGAGGATCAAAATCGAAATCTGGAAGCAGTGGTGCACGGGAGAAGCTAAGGAAGTGTCTAAT CAACTTGGTGCACCCAAAGAGAAGCGCCGTCATGACTCTTCAGAAATGGAGAGAAGAGGGCAACAAAATTCAGAAGTACGAGTTGAATCGGATTGTTCGG GAACTCAGAAGTCTCAAGCGGTTCAAACACGCTCTCGAGGTTTGTGAATGGATGAATCTACAGCCTGATATCAAGCTAGTAGCAGGAGATTACGCAGTCC ATCTCGATTTGGTTGCGAAAGTCCGGGGTCTGCCAAGTGCCGAGAAGTTTTTCGAAGATCTTCCCGATAACATGAGAGGCAGTCTAGCGTGTACATCTCT TCTACATACATATGTCCAGAACAAGGTGCCTGAGAAAGCTGAAGCTTTAATGGAGAAGATGACTGAATGTGGTTTCTTGAAGAACCCTTTGCCTTTTAAC CACATGCTATCTATGTACATTGCAAATAAGCAATTGGAGAAGGTTCCAGAAGTTATTCGGAAGCTGAGGATACATTCCACACCCGACATTTTCACGTATA ATTTGTGGTTAACCGCTTGTGCAGGAGAAGACGATGAAGAAACTGCAGAAAAGGTGTTCAAGGAACTGAAGAAGGTGGCGTTAGAGCCAGACTGGGTAAC CTACAGCATATTGGCCAATCTCTACGTTAAAAAGAACCTTCACGAACGAGCATTGCCTATGTTGAAGGAAATGGAGAAAATGGCTTCACGTAACAATCGA CTTACCTATCCTTCTTTGATCAGTTTGTACACGGCCATTGGAGATAGCGATGCTGTTCATCGAATCTGGGATCAGCTGAAAGCATGCTTCGGTAAGATGA ATCGTAAGATGAACGATGCAGAGTACATATTTATGATGACGTCTCTAGTTAAACTGAACGAATTATCAGAAGCTGAGAAGGTCTTTAGCGAATGGGAGTC GATCTCCACCTCCGTTCATCCTGGCATTCCGAATGTGCTTCTTGCTGCCTATATCAACAACAACCAGCTGGACGAGGCTCGAAAGTTGCACAAGCGCATG GAAAAGAAGCATGTGCCTCCTTGTTACACGACATGGGAGCTTTTGACTTCGATGCATCTGAAAACAGGAAAGACGAGGGAGGCACTGGATTGCTTCGAGA AAGCCGTTACTTGTGTCAAGAAATGGAGCCCCGACACGGAGTGGATTCAACAGGTGTTCGGTGTGCTTGAGCAGCAGGGTGATATCGAAGGAGCAGAGAA GTTCTTGGTCATACTCCGTGATGCTGGACACTCGAGTACCGTGGTGTACAATTCTCTTCTGAGAACTTACGCGCATGCTGGTAAGATGCCGCTTATAGTC TTGGAGCGCATGACCAAAGATAATGTCGAGCTTGATGATGAAACGCATGAGCTCATAGAAAAGACCCGTAACATGCCTGTCAGTGAAGCTGCAAGTTTCA TAACATGA
AA sequence Show only first row Show all	>Lus10042574 pacid=23181941 polypeptide=Lus10042574 locus=Lus10042574.g ID=Lus10042574.BGIv1.0 annot-version=v1.0 MLLQRATSTVRAIAAPTVGAIAAVTARRLTTEVAAEEKIVAAVSEGGGSKSKSGSSGAREKLRKCLINLVHPKRSAVMTLQKWREEGNKIQKYELNRIVR ELRSLKRFKHALEVCEWMNLQPDIKLVAGDYAVHLDLVAKVRGLPSAEKFFEDLPDNMRGSLACTSLLHTYVQNKVPEKAEALMEKMTECGFLKNPLPFN HMLSMYIANKQLEKVPEVIRKLRIHSTPDIFTYNLWLTACAGEDDEETAEKVFKELKKVALEPDWVTYSILANLYVKKNLHERALPMLKEMEKMASRNNR LTYPSLISLYTAIGDSDAVHRIWDQLKACFGKMNRKMNDAEYIFMMTSLVKLNELSEAEKVFSEWESISTSVHPGIPNVLLAAYINNNQLDEARKLHKRM EKKHVPPCYTTWELLTSMHLKTGKTREALDCFEKAVTCVKKWSPDTEWIQQVFGVLEQQGDIEGAEKFLVILRDAGHSSTVVYNSLLRTYAHAGKMPLIV LERMTKDNVELDDETHELIEKTRNMPVSEAASFIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	0	1
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	2.2	0.8537
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	3.5	0.8464
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	3.7	0.8384
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10036545 [exp]	5.8	0.8162
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	7.3	0.8465
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	7.7	0.8224
					Lus10033824 [exp]	7.9	0.7985
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	8.5	0.8367
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	9.7	0.8449
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	10.7	0.8527

Compare expression of checked genes

Lus10042574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.