Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03170 84 / 4e-19 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT4G02810 78 / 7e-17 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT5G19260 75 / 1e-15 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT5G22090 71 / 9e-14 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT3G06020 54 / 4e-08 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022036 [exp] 372 / 3e-131 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 159 / 3e-47 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 158 / 3e-47 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 98 / 4e-24 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 98 / 7e-24 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 87 / 3e-20 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 73 / 2e-14 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 66 / 4e-12 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10021930 [exp] 62 / 1e-11 AT5G19260 68 / 5e-14 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209100 [exp] 133 / 2e-37 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 123 / 1e-33 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.008G149600 [exp] 109 / 6e-28 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 90 / 6e-21 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 90 / 2e-20 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 74 / 1e-14 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.009G162800 [exp] 51 / 2e-07 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.004G201500 [exp] 47 / 6e-06 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1) Potri.005G037600 [exp] 45 / 3e-05 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.004G144000 [exp] 43 / 5e-05 AT5G22090 45 / 6e-06 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10042576 pacid=23181773 polypeptide=Lus10042576 locus=Lus10042576.g ID=Lus10042576.BGIv1.0 annot-version=v1.0 ATGGCATTATCCAGTCAGGGCCTTCAGTCCTTCCTGGACCCACCCATTCAACTGGAGCCTCGAGTCTTGCGGCTCCGGCTGGCTGCTCCCGACCCGGAGC CAGACAATGCTGCCCGCTCTGGGTTCAGCTTCCTGCAATCCATGACCGAAAACGAAACCCTCGCCAAAGAAGTATATGTGCCGCCGACGATGAAGCGTTC GGCGTCGTCCCTGAGCAAGCAGAGCCTGGAAATGTGCACGGAGAGCCTGGGGAGTGAGACAGGAACCGACGAGCACGGAAACAACAGCGACGACGAGATG ATGTTCATCTCCCCGTCCAGGCAGGCAGTTAGTAATAATTGGAGTGAGCGAGTTGAAGAGAAGAGGAGGACGAGGAGGAGTTCGAGGAGGAGGAATATGG TGTTTCCACCTCCATTAACTTCAATTGGAAGTTCCGGCGACGTGCAAATGAGGTCTCGCAGGGAAGACGGAAGGCTTGTGTTGACTGCGGTGAGTGTCTC TTCCTGCCGTGCTAATTTCCAGGCGGAGAGGTCCGATGGAAGGCTCAGGCTCCGGCTTACCACCACCGCCGCGGATTTTCCCACCCAAGAAGAAGAAGAA GAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAAAAAAAGCAGAGGAGAAAACAGAGGAGGAAGAAGAAGAGAAAGAGAAAGTGGAGATGGGAA GCAGGAGAGGAGGGAGGTGTATGGAAACAGGGGATGATAAAAACAGAGGATTGCTGAACCAATGGGAGCCATTTTGGGTGGCTACTTGA
AA sequence Show only first row Show all	>Lus10042576 pacid=23181773 polypeptide=Lus10042576 locus=Lus10042576.g ID=Lus10042576.BGIv1.0 annot-version=v1.0 MALSSQGLQSFLDPPIQLEPRVLRLRLAAPDPEPDNAARSGFSFLQSMTENETLAKEVYVPPTMKRSASSLSKQSLEMCTESLGSETGTDEHGNNSDDEM MFISPSRQAVSNNWSERVEEKRRTRRSSRRRNMVFPPPLTSIGSSGDVQMRSRREDGRLVLTAVSVSSCRANFQAERSDGRLRLRLTTTAADFPTQEEEE EEEEEEEEEEEEEKKAEEKTEEEEEEKEKVEMGSRRGGRCMETGDDKNRGLLNQWEPFWVAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	0	1
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	2.6	0.9766
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040136 [exp]	3.0	0.9603
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	4.7	0.9747
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	6.2	0.9742
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	7.1	0.9718
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	7.2	0.9742
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10033596 [exp]	8.5	0.9399
AT5G36000			unknown protein		Lus10004013 [exp]	8.5	0.9712
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	8.8	0.9681
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	9.5	0.9535

Compare expression of checked genes

Lus10042576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.