Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02800 108 / 3e-28 unknown protein AT1G30050 54 / 3e-08 unknown protein AT5G01970 47 / 3e-06 unknown protein AT2G30530 43 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022037 [exp] 233 / 2e-76 AT4G02800 276 / 1e-91 unknown protein Lus10000658 [exp] 185 / 2e-57 AT4G02800 266 / 1e-87 unknown protein Lus10014668 [exp] 167 / 1e-50 AT4G02800 262 / 1e-85 unknown protein Lus10035609 [exp] 46 / 1e-05 AT1G30050 187 / 5e-56 unknown protein Lus10034444 [exp] 44 / 4e-05 AT2G30530 268 / 3e-86 unknown protein Lus10019115 [exp] 44 / 5e-05 AT2G30530 267 / 5e-86 unknown protein Lus10031947 [exp] 43 / 0.0001 AT5G01970 263 / 1e-85 unknown protein Lus10035153 [exp] 41 / 0.0004 AT5G01970 264 / 8e-85 unknown protein Lus10003240 [exp] 40 / 0.0007 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G053100 [exp] 127 / 4e-35 AT4G02800 276 / 3e-91 unknown protein Potri.005G209400 [exp] 123 / 1e-33 AT4G02800 291 / 3e-97 unknown protein Potri.016G141300 [exp] 52 / 9e-08 AT5G01970 353 / 2e-119 unknown protein Potri.006G111900 [exp] 48 / 1e-06 AT5G01970 352 / 2e-118 unknown protein Potri.013G160100 [exp] 47 / 4e-06 AT2G30530 266 / 8e-85 unknown protein Potri.019G132300 [exp] 45 / 1e-05 AT2G30530 253 / 9e-80 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042577 pacid=23181892 polypeptide=Lus10042577 locus=Lus10042577.g ID=Lus10042577.BGIv1.0 annot-version=v1.0 ATGGCTACCGCTTCCATTCAATCTTCTCCATCCACGGGAGCTAGATCTCTGGCGGATCCCCCAACGTTGACAGAACTGATCCAGGCAAAGATCCAGAACG ATGAGAAGGAAGCAGAATCGGAAAAGGATGGGGGGTTAAGATTGGGATCAAAAGGAAACTGGATTCTGATGAATCTGATATTAGCTCAGTTGGTGAAGGA AACTGCTTTGACGGTTTCCATGGCGAAGAAGGCTGCTGAAATGGCGAGGGAGCTCAAGTCGATGAAGTCTGATATGTGCTTTGTGCAAGAGAGATGTGGT CTGTTGGAGGAAGAGAACACAAGGCTTAGGGATGGATTTTCCTCCGGGATTCGACCCGAGGAAGACAACCTGAGAACACCAGACCCTTCACCAGCTTGTA GAGTACCACCAACTTCTCAGGATCTCTCCGCGTCTTATGAGCAACTTGTTCGTGGGATGGGACTCGATTTCTCGTCTCCGGATTGCTCAATGGAAAAGGA GAATGACCACGCGGATGATGAGGTTGATGATCATGAAGGAGGAACGTCATCGTGGCATCCTTCAAACATTGTTGAATTGTCTACTTCTCTTGATAAGTAC TTTGAGGAAGAGCAGTACAAATTGTCCTTAAAAGAGGCACACACAGTATGA
AA sequence Show only first row Show all	>Lus10042577 pacid=23181892 polypeptide=Lus10042577 locus=Lus10042577.g ID=Lus10042577.BGIv1.0 annot-version=v1.0 MATASIQSSPSTGARSLADPPTLTELIQAKIQNDEKEAESEKDGGLRLGSKGNWILMNLILAQLVKETALTVSMAKKAAEMARELKSMKSDMCFVQERCG LLEEENTRLRDGFSSGIRPEEDNLRTPDPSPACRVPPTSQDLSASYEQLVRGMGLDFSSPDCSMEKENDHADDEVDDHEGGTSSWHPSNIVELSTSLDKY FEEEQYKLSLKEAHTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02800			unknown protein		Lus10042577 [exp]	0	1
AT5G12360			unknown protein		Lus10039048 [exp]	4.5	0.9440
AT4G15140			unknown protein		Lus10010477 [exp]	6.2	0.9309
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	7.7	0.9298
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	9.1	0.9325
AT5G07670			RNI-like superfamily protein (...		Lus10031742 [exp]	12.6	0.9209
AT4G02800			unknown protein		Lus10022037 [exp]	14.2	0.9174
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	16.7	0.9166
AT5G12360			unknown protein		Lus10038810 [exp]	18.2	0.9200
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	18.9	0.9075
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	19.1	0.9038

Compare expression of checked genes

Lus10042577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.