Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63120 183 / 3e-58 CYCP1;1 cyclin p1;1 (.1) AT2G44740 170 / 2e-53 CYCP4;1 cyclin p4;1 (.1) AT3G05327 162 / 4e-50 Cyclin family protein (.1) AT5G61650 155 / 3e-47 CYCP4;2 CYCLIN P4;2 (.1) AT5G07450 154 / 8e-47 CYCP4;3 cyclin p4;3 (.1) AT3G21870 148 / 2e-44 CYCP2;1 cyclin p2;1 (.1) AT2G45080 141 / 1e-41 CYCP3;1 cyclin p3;1 (.1) AT3G60550 138 / 1e-40 CYCP3;2 cyclin p3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022038 [exp] 427 / 2e-154 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10029933 [exp] 181 / 3e-57 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10004475 [exp] 179 / 8e-57 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10032505 [exp] 160 / 8e-49 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10039697 [exp] 159 / 2e-48 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10043003 [exp] 159 / 2e-48 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10027148 [exp] 158 / 1e-47 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10042873 [exp] 151 / 2e-45 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 139 / 2e-41 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052800 [exp] 315 / 1e-109 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.005G209800 [exp] 307 / 4e-107 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.013G023000 [exp] 206 / 2e-67 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 201 / 2e-65 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.007G121500 [exp] 176 / 4e-55 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.015G112140 [exp] 172 / 4e-54 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.012G114600 [exp] 171 / 2e-53 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.014G050400 [exp] 170 / 3e-53 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.002G143400 [exp] 147 / 3e-44 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.014G066400 [exp] 143 / 2e-42 AT3G60550 343 / 3e-121 cyclin p3;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10042582 pacid=23181862 polypeptide=Lus10042582 locus=Lus10042582.g ID=Lus10042582.BGIv1.0 annot-version=v1.0 ATGGGAACTTTGCCAACTGATACCGGTGAGTGTCTTGAGGACTCGAATGTATACTTATCCTTGGGGCTCAAGGAAGCCGGAAAAGGATCATCAGCAAGTA AATCTCCAAGAGTTTTAGCGCTCGTTTCCTCTCTTCTCGAGAGATTGGTTCAAACAAACGAGTTACTAGTGGAGACGAACGAGATCAAAGATGTTGCTAC GGTTTTCCATGGGTTAAGAGCACCAGCAGTAAGCATTCGCCAGTACATTGATCGCATCTTCAAGTACTCTTGCTGCAGCCCTGCCTGCTTTGTTGTTGCG CAGATATACGTGGACCGGTTTATAACACAGACCGATGTCCATTTGACCTCTTTCAACGTCCACCGCTTCCTCATCACTAGCGTTATGCTGGCTGCCAAGT TCGTCGATGATGCGTTTTTCAACAATGCATACTACGCGAGAGTCGGGGGGATAAGCACGGGGGAGTTGAACAAGTTGGAGATGAAGTTTTTGTTCAGCAT AGATTTCAGACTTCAGGTAAATACCGCCACATTCGGGAGGTACTGCCATAACTTGGAACGAGAAGCTGGTACAGACGGACTCCACCAAATTGAACGGTCG ATTCAAGCTTGTAGAATCAAAGAAACTTGGTCGAGCAACGAAGATTCGAGCACTTGCACTGCTCCTGCAATTGCTAGATGA
AA sequence Show only first row Show all	>Lus10042582 pacid=23181862 polypeptide=Lus10042582 locus=Lus10042582.g ID=Lus10042582.BGIv1.0 annot-version=v1.0 MGTLPTDTGECLEDSNVYLSLGLKEAGKGSSASKSPRVLALVSSLLERLVQTNELLVETNEIKDVATVFHGLRAPAVSIRQYIDRIFKYSCCSPACFVVA QIYVDRFITQTDVHLTSFNVHRFLITSVMLAAKFVDDAFFNNAYYARVGGISTGELNKLEMKFLFSIDFRLQVNTATFGRYCHNLEREAGTDGLHQIERS IQACRIKETWSSNEDSSTCTAPAIAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10042582 [exp]	0	1
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10004389 [exp]	4.5	0.6919
AT4G37890		EDA40	embryo sac development arrest ...		Lus10039635 [exp]	46.5	0.5429
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019502 [exp]	75.1	0.5944
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10040187 [exp]	77.3	0.5961
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10008115 [exp]	103.5	0.5897
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	116.1	0.5563
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	119.0	0.5644
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10038349 [exp]	119.9	0.5583
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10019256 [exp]	130.7	0.5498
AT4G21105			cytochrome-c oxidases;electron...		Lus10020569 [exp]	133.9	0.5650

Compare expression of checked genes

Lus10042582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.