Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19330 810 / 0 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 712 / 0 ABAP1 ARMADILLO BTB protein 1 (.1) AT3G06190 80 / 1e-15 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT3G43700 77 / 1e-14 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G19000 73 / 2e-13 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT5G58680 70 / 1e-12 ARM repeat superfamily protein (.1) AT3G03740 69 / 4e-12 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT2G39760 68 / 8e-12 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G01400 67 / 1e-11 ARM repeat superfamily protein (.1) AT3G56230 62 / 2e-10 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022039 [exp] 1274 / 0 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10010527 [exp] 784 / 0 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10034070 [exp] 779 / 0 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10041235 [exp] 80 / 2e-16 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 79 / 4e-15 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10003365 [exp] 79 / 4e-15 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 79 / 5e-15 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10027086 [exp] 69 / 1e-11 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004701 [exp] 68 / 1e-11 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210000 [exp] 870 / 0 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 855 / 0 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.008G150100 [exp] 808 / 0 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G090900 [exp] 695 / 0 AT5G19330 961 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.001G184200 [exp] 87 / 8e-19 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 86 / 1e-17 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 83 / 1e-16 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 75 / 5e-14 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.010G029500 [exp] 74 / 1e-13 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G059600 [exp] 72 / 5e-13 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10042583 pacid=23181831 polypeptide=Lus10042583 locus=Lus10042583.g ID=Lus10042583.BGIv1.0 annot-version=v1.0 ATGGAACGTCAATCAGCTTCCACCACCCGAAGGATCCTGAAACGGAAGCTGGAGCAGGAGTTCGTTGAAGAAGATAAAATAGATGTAAAGGTTCCCAAGG TTGAAGTAGCTGAATCCGACGACACAGCCGCTGAGGAGGTGGATACCAGAAGTCAGATTCAAGCTGAAGTCAGAGTACTGCACTCCTCTTTCTCTCCTCG TCAAGCCGATCGTGAATCGGCTAAGCTGGCTGCTCAGTTCATTTCCCAGCTGGCCAAGGATGAGGATTTCGTTGATAATATTGTGGACTGCGGCGCTATT CCTGCACTGATTAAGCATCTTCAGACGCCACCTGATGATGGCAGCCGCGATGACGATGAGAATGCAGATCTGATTCAGCTCGAGGTGGAGAAGGCCTGCG CGTTTGGTCTTGCGCTCATTGCCATACAGGATTTTGATTTTGTGGAATCTGTTCTTCCCCCCCCTTTGATTGTTAAACAGCCACAGTATCAACAAGTCAT AGTAGATGCTGGAGCACTACCACATCTTGTATCTCTGCTGAAGAGACACAAAACTCATGGCAGCTCTCGGCTTGCCACTGGTGTTATCAGGAAAGCAGCT GACGCAATCACAAACCTAGCTCATGAGAACAGCTCAATCAAAACACTTGTTAGGATCGAAGGTGGCATTCCACCCCTTGTAGAGTTGCTTGATTCTGTTG AGCCAAAAATTGTGGAACTCAATGTCTTGGATACCCTTGTATTAATGCTCCAGTCAGAAGATCCTACCATACATTTTGAAGCGGTTGGTGTGATTGGAAA TCTTGTGCATTCATCCCCACACATTAAGCAAATGGTTCTTCTTTCTGGGGCTTTACAACCTGTCATTTGTTTACTTCGTTCAACTTGTTCAGAGAGCCAA AGAGAAGCAGCTTTGCTATTAGGTCAATTTTCTACTACCGATTCTGAGTGCAAGGTGCATATAGGTCAGAGAGGAGCAATTCCACCATTGATTGATATGC TCGATTCCTCTGATGTTCAACTTAAGGAAATGTCAGCCTTTGCCCTTGGGAGGCTGGCTCAGGAAACTCATAACCAAGCTGGTATAGTGCATCACGGTGG TATAATACCACTATTAAAGCTTCTTGGGTCAAATAATGGATCTCTTCAGCATAATGCTGCTTTTACTATATTCGGTCTTGCAGAGAATGAGGATAACATT GCTTATCTCATCAAGGTTGGCGCAGTTCAGAAACTCCAAGATGGTGATTACAAATCTCAACCTACGAAGGAATGTGTGGAAAAAACATTGAAAAGAATAG AAGAAAATATCCACGGACGGGTATTGAAGCGCCTCATATATCTGATGCGATCGGGAGAGAAAACCGAGCAGAGACAGATTGCATTGGCTCTTGCATATCT TTGCGCACCTAATGATCGTAAAGCCATTTTTCTCAATAACAATGGATTAGAGACTCTGTTGGAACCTCTCGAGGCGGGAAACCTGAAGCCGCGGAATGGG GGAGCTGAGGCTTTGTATAAGTTGGCTACCAAGGCTACTACTGTCTTTCCCATTACTCCAGCTCCTTTATCACCAACCCCACAGGTATATCTGGGGGAAC AGTATGTAAACAACTCAACATTATCTGATGTAACCTTTTTAATTGAAGGCAAGCGATTCTATGCTCACAGGATTTGCCTCCTTGCATCATCTGATACATT CCGTGCAATGTTTGATGGGGGTTACAAGGAGAAGGAAGCTAAAGATGTGGTGATCCCAAACATAAGATGGGAAGTCTTCGAGTTGATGATGCGGTTCATA TACACTGGATCGGTTGATATTAACATAAATGTTGCCCACGAACTATTGGTAGCTGCAGATCAGTATTTCTTAGATGGTCTAAAGCGACTCTGTGAGTACG CTATCGCTCAGGACATCTCCGTAGAAAATATCAGTCAGATGTATGAGCTATCGGAAAGCTTCTGCGCCATGACCTTACGAGAAGCGTGCATACTCTTCAT ATTTCAGAACTTTGATAAACTGAGCTCCAGGCCATGGTTTTCTCGTTTTATTAAGCGAGTTTTGCCGGAGATTCGTTCTTACTTTGCCAGAGCACTGGTC ATCACCAACCCTCTCCAACCTTTGATGTGA
AA sequence Show only first row Show all	>Lus10042583 pacid=23181831 polypeptide=Lus10042583 locus=Lus10042583.g ID=Lus10042583.BGIv1.0 annot-version=v1.0 MERQSASTTRRILKRKLEQEFVEEDKIDVKVPKVEVAESDDTAAEEVDTRSQIQAEVRVLHSSFSPRQADRESAKLAAQFISQLAKDEDFVDNIVDCGAI PALIKHLQTPPDDGSRDDDENADLIQLEVEKACAFGLALIAIQDFDFVESVLPPPLIVKQPQYQQVIVDAGALPHLVSLLKRHKTHGSSRLATGVIRKAA DAITNLAHENSSIKTLVRIEGGIPPLVELLDSVEPKIVELNVLDTLVLMLQSEDPTIHFEAVGVIGNLVHSSPHIKQMVLLSGALQPVICLLRSTCSESQ REAALLLGQFSTTDSECKVHIGQRGAIPPLIDMLDSSDVQLKEMSAFALGRLAQETHNQAGIVHHGGIIPLLKLLGSNNGSLQHNAAFTIFGLAENEDNI AYLIKVGAVQKLQDGDYKSQPTKECVEKTLKRIEENIHGRVLKRLIYLMRSGEKTEQRQIALALAYLCAPNDRKAIFLNNNGLETLLEPLEAGNLKPRNG GAEALYKLATKATTVFPITPAPLSPTPQVYLGEQYVNNSTLSDVTFLIEGKRFYAHRICLLASSDTFRAMFDGGYKEKEAKDVVIPNIRWEVFELMMRFI YTGSVDININVAHELLVAADQYFLDGLKRLCEYAIAQDISVENISQMYELSESFCAMTLREACILFIFQNFDKLSSRPWFSRFIKRVLPEIRSYFARALV ITNPLQPLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	0	1
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	1.7	0.9745
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10006888 [exp]	2.6	0.9628
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	3.5	0.9713
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	4.0	0.9681
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	4.9	0.9697
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	5.7	0.9607
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	6.3	0.9601
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	6.7	0.9602
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	6.9	0.9634
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	7.1	0.9649

Compare expression of checked genes

Lus10042583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.