Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63200 240 / 2e-79 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT2G39220 115 / 1e-30 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 107 / 8e-28 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 100 / 2e-25 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022040 [exp] 302 / 5e-105 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10040394 [exp] 102 / 7e-26 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 100 / 4e-25 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10038350 [exp] 96 / 7e-25 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10036526 [exp] 99 / 9e-25 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10038349 [exp] 98 / 2e-24 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036212 [exp] 89 / 2e-21 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10023512 [exp] 79 / 1e-17 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052600 [exp] 241 / 4e-80 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.005G210100 [exp] 241 / 6e-80 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.008G040500 [exp] 110 / 6e-29 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.012G123900 [exp] 108 / 2e-28 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.010G221700 [exp] 107 / 5e-28 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.015G122700 [exp] 106 / 2e-27 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042584 pacid=23181729 polypeptide=Lus10042584 locus=Lus10042584.g ID=Lus10042584.BGIv1.0 annot-version=v1.0 ATGAACAACCCGACGGCAGCCGCTGTCACTCACGTCCTCCACAACAAACGCGATTTCCCGTCGGTGAACGGCGTTGAGGATTTGCTTGTCCTGTCTCTAG GCAACGGCCCTGCCGTCGGTGGGAAACTGGTCCGCCGCCGCAACGGCGAATGCTCCGCTTCGTCGATTGTAAACATCGCGCTTGACGGCGTCTCGGAAAC AGTCGACCAAATGCTGGGGAATGCTTTCTGCTGGAACCGCACGGACTACATCAGAATCCAGGCAAATGGGTTGACGAGTGGGAAAACGATGGGGCCAAGA GAAGAAGTGTTAACGGAGAGAGGAGTGGAGTCACTTCCGTTTGGCGGGAAGCGGTTACTAACGGAGACAAACGGGGAAAGAATCGAGAAGTTAGCGCAAC GTCTTGTTGCTTCTGGGAGGAGTAGCTTGCCTCCGAGTCCTTGCAAGGAATCGGCCGTCGTTAGCCCACTCGTTAGTTAA
AA sequence Show only first row Show all	>Lus10042584 pacid=23181729 polypeptide=Lus10042584 locus=Lus10042584.g ID=Lus10042584.BGIv1.0 annot-version=v1.0 MNNPTAAAVTHVLHNKRDFPSVNGVEDLLVLSLGNGPAVGGKLVRRRNGECSASSIVNIALDGVSETVDQMLGNAFCWNRTDYIRIQANGLTSGKTMGPR EEVLTERGVESLPFGGKRLLTETNGERIEKLAQRLVASGRSSLPPSPCKESAVVSPLVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042584 [exp]	0	1
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042585 [exp]	1.0	0.9708
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	6.0	0.9170
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	6.3	0.9002
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	6.8	0.9214
AT5G19580			glyoxal oxidase-related protei...		Lus10011109 [exp]	8.9	0.8514
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10014209 [exp]	9.8	0.8967
AT4G28230			unknown protein		Lus10039766 [exp]	11.6	0.8787
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	12.5	0.9040
AT5G01910			unknown protein		Lus10022734 [exp]	13.2	0.9063
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	14.8	0.9063

Compare expression of checked genes

Lus10042584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.