Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63200 108 / 9e-29 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT4G29800 66 / 3e-13 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT2G39220 62 / 5e-12 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT5G43590 62 / 7e-12 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G37060 61 / 1e-11 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT2G26560 59 / 7e-11 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT3G54950 59 / 7e-11 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G37070 54 / 2e-09 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041402 [exp] 66 / 4e-13 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036526 [exp] 64 / 2e-12 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10038349 [exp] 63 / 4e-12 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10019637 [exp] 58 / 1e-10 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 58 / 1e-10 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10023512 [exp] 58 / 2e-10 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10040394 [exp] 57 / 3e-10 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10009340 [exp] 56 / 6e-10 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10022040 [exp] 53 / 1e-08 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210100 [exp] 121 / 1e-33 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.002G052600 [exp] 114 / 5e-31 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.008G040500 [exp] 69 / 1e-14 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.015G122700 [exp] 69 / 3e-14 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.012G123900 [exp] 68 / 3e-14 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.010G221700 [exp] 66 / 2e-13 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.007G040300 [exp] 61 / 1e-11 AT2G26560 390 / 6e-134 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G034000 [exp] 58 / 1e-10 AT2G26560 529 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.007G040400 [exp] 57 / 3e-10 AT2G26560 402 / 8e-139 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014405 [exp] 56 / 7e-10 AT2G26560 275 / 7e-89 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042585 pacid=23181730 polypeptide=Lus10042585 locus=Lus10042584.g ID=Lus10042585.BGIv1.0 annot-version=v1.0 ATGCCGCCAGGAAGACCAGAGTTCTTAGCATTGACGGTGGCGGAAGCACCGGCATTGTCGCTGGAGCCGCTCTTGTCCATCTCTCTTGTCCATCTCGAGG ACCAGATCCGACTCAAGCTTGGAGATCCACATGCTCGAATCGCTGATTTCTTCGACCTCATTGCCGGCACTGGCATTGGTGCCGTTCTCGCTTCCATGCT AGCTGCCGACGATGGTTCCGGCCGTCCTCTGTTCTCCGCTCGTGAAGCGGTTGATTTCCTTGCTGACAGAAACTCCGAACTCTTCAAACCGAAGCGCCTC TCCGCCGTCCTCTCCGGCAGCCGCCCCGCATTCTCCGGGCGGCGTGTCTGTTCAACCCGTTCGACCTCAAATCCGTCGACGGTAAGACATCCTGCTCCGC TATCGATGGAGGATTGGTGA
AA sequence Show only first row Show all	>Lus10042585 pacid=23181730 polypeptide=Lus10042585 locus=Lus10042584.g ID=Lus10042585.BGIv1.0 annot-version=v1.0 MPPGRPEFLALTVAEAPALSLEPLLSISLVHLEDQIRLKLGDPHARIADFFDLIAGTGIGAVLASMLAADDGSGRPLFSAREAVDFLADRNSELFKPKRL SAVLSGSRPAFSGRRVCSTRSTSNPSTVRHPAPLSMEDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042585 [exp]	0	1
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042584 [exp]	1.0	0.9708
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	4.7	0.9221
AT5G01910			unknown protein		Lus10022734 [exp]	9.0	0.9125
AT5G19580			glyoxal oxidase-related protei...		Lus10011109 [exp]	9.7	0.8506
AT5G43020			Leucine-rich repeat protein ki...		Lus10024803 [exp]	14.3	0.9006
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	15.7	0.9021
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	16.4	0.8815
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	21.2	0.8946
AT4G37090			unknown protein		Lus10000742 [exp]	22.0	0.8683
AT3G54400			Eukaryotic aspartyl protease f...		Lus10024148 [exp]	23.5	0.8723

Compare expression of checked genes

Lus10042585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.