Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008292 [exp] 115 / 5e-33 ND / Lus10024524 [exp] 87 / 4e-22 ND / Lus10015577 [exp] 64 / 1e-13 ND / Lus10011725 [exp] 58 / 1e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042586 pacid=23182013 polypeptide=Lus10042586 locus=Lus10042586.g ID=Lus10042586.BGIv1.0 annot-version=v1.0 ATGTTGGCCAAGCCTTATGGTCATAAGGTGGACAAACCAAACTACACGGAAGCCTCCACTTCGAAACAGAAGAACAAATATCTCAAGCTGTTACCTTCAA TTTTCCATACTTATGTCAAGGTGGATGATCCGGGTCAGGGAGATGCGGTTCCACCTCTGTCTTCTTCATCTCTTAATGTCGCCTCTGGTATCTCTGATGT TCCAATTCCTCTCACTTCTGGTATTCAAGAGTTAATGTTGGTGGACAAGAAACGGAGCCGGTCTTTGATGGAAGAGGATGAAGCGGAGTCGTCCTCTACT CCAAAAAAGCTGAAGTTTGAAGCTTCTTTGACTGTTGATGACTTCCCTGCTCATGCTCTGGAGCTAGAGATGCTCCCGGATGAAATTTTAGACGAAGATC CAGATATGATTGTTGTTTTTGCGACCTTGACTACATCTATGGTGGAGGGGGATCACCTGAACAGGCCCCTAGAGCCGGAATGA
AA sequence Show only first row Show all	>Lus10042586 pacid=23182013 polypeptide=Lus10042586 locus=Lus10042586.g ID=Lus10042586.BGIv1.0 annot-version=v1.0 MLAKPYGHKVDKPNYTEASTSKQKNKYLKLLPSIFHTYVKVDDPGQGDAVPPLSSSSLNVASGISDVPIPLTSGIQELMLVDKKRSRSLMEEDEAESSST PKKLKFEASLTVDDFPAHALELEMLPDEILDEDPDMIVVFATLTTSMVEGDHLNRPLEPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042586 [exp]	0	1
					Lus10037567 [exp]	10.5	0.9216
					Lus10014692 [exp]	14.0	0.9051
					Lus10027902 [exp]	17.1	0.9194
					Lus10017551 [exp]	19.1	0.9090
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10025641 [exp]	21.2	0.9161
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10022633 [exp]	23.3	0.7727
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10003990 [exp]	27.2	0.7846
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10042102 [exp]	28.9	0.9058
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	29.2	0.9058
AT1G73120			unknown protein		Lus10022961 [exp]	29.5	0.8799

Compare expression of checked genes

Lus10042586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.