Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63190 287 / 1e-97 HFP108, AtcpRRF, RRF "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1) AT3G01800 104 / 2e-26 Ribosome recycling factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022041 [exp] 438 / 8e-157 AT3G63190 291 / 9e-99 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1) Lus10032060 [exp] 96 / 3e-23 AT3G01800 372 / 4e-131 Ribosome recycling factor (.1) Lus10035226 [exp] 96 / 4e-23 AT3G01800 367 / 5e-129 Ribosome recycling factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052400 [exp] 306 / 8e-105 AT3G63190 308 / 2e-105 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1) Potri.001G333700 [exp] 102 / 2e-25 AT3G01800 316 / 3e-109 Ribosome recycling factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01765 [flax] [poplar] RRF Ribosome recycling factor
Representative CDS sequence Show only first row Show all	>Lus10042587 pacid=23181739 polypeptide=Lus10042587 locus=Lus10042587.g ID=Lus10042587.BGIv1.0 annot-version=v1.0 ATGTGTAGTGTATCGGCAGGCTTGTGCCACGCCCCGCTGCATCATTCGAAGTCCTACACCACCACTGCTTCTCTCGGGTTCTGTAGCTCCCCTGCTAGCA CGGGGAGCTGCGCTGCAAAAGTTTGGGGGAAGCCAATTGTTCTGAAGCGATTGTCGCAGAAGATTGACCGATTTGTGAGGTTTGCAACTATGGAAGAAAT TGAAGCTGAGAAAACCTCCATTGAACAGGATGCTAAATCAAGGATGGAGAAGACAATTGAGACACTCCGAAACAATTTCAACTCTGTAAGGACGGGAAGA GCTAACCCTGCCATGTTGGATAAGATTCAGGTGGAGTACTATGGAAGTCCAGTATCACTGAAATCCATCGCTCAGATCAGTTCTCCTGATGCTAGCTCTC TTCTGATTAACCCATACGACAAGTCCAGCTTGAAGATCATTGAGAAGGCCATCGTTAATTCCGATCTTGGTGTGACACCAAACAATGATGGAGAAGTTAT CCGACTCTCTGTTCCTCAGCTGACATCTGAAAGAAGGAAGGAAATGTCGAAAGTGGTAGCTAAAATGGCTGAAGAAAGCAAGATAGCTTTGAGGAATGTA AGAAGGGATGCACTGAAAGCATATGAGAAGCTTGAGAAGGAGAAAAAGCTGTCGGAAGATAACGTGAAGGACTTGTCCGGAGGAATTCAGAAACTGATAG ATGAATACACAAAGAAGGTAGATAGCCTTTTCAAACAAAAAGAAAAGGTACGTCCAAATTTGGAAAAGAATTCCACATCAAGCTTCAGTGGTTTATGTCA TAATGAAATATGA
AA sequence Show only first row Show all	>Lus10042587 pacid=23181739 polypeptide=Lus10042587 locus=Lus10042587.g ID=Lus10042587.BGIv1.0 annot-version=v1.0 MCSVSAGLCHAPLHHSKSYTTTASLGFCSSPASTGSCAAKVWGKPIVLKRLSQKIDRFVRFATMEEIEAEKTSIEQDAKSRMEKTIETLRNNFNSVRTGR ANPAMLDKIQVEYYGSPVSLKSIAQISSPDASSLLINPYDKSSLKIIEKAIVNSDLGVTPNNDGEVIRLSVPQLTSERRKEMSKVVAKMAEESKIALRNV RRDALKAYEKLEKEKKLSEDNVKDLSGGIQKLIDEYTKKVDSLFKQKEKVRPNLEKNSTSSFSGLCHNEI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10042587 [exp]	0	1
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	1.4	0.9826
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	2.0	0.9825
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10002497 [exp]	3.5	0.9719
AT2G30695			unknown protein		Lus10008364 [exp]	3.5	0.9763
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	5.2	0.9785
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	6.3	0.9720
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	6.7	0.9635
AT2G01755			unknown protein		Lus10030691 [exp]	8.8	0.9491
AT2G30695			unknown protein		Lus10004790 [exp]	9.5	0.9549
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	9.9	0.9676

Compare expression of checked genes

Lus10042587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.