Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10270 655 / 0 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 634 / 0 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT1G71530 330 / 9e-108 Protein kinase superfamily protein (.1.2) AT5G44290 331 / 9e-106 Protein kinase superfamily protein (.1.2.3.4) AT1G03740 330 / 9e-105 Protein kinase superfamily protein (.1.2) AT5G50860 316 / 1e-100 Protein kinase superfamily protein (.1) AT1G53050 308 / 1e-96 Protein kinase superfamily protein (.1) AT1G33770 306 / 2e-96 Protein kinase superfamily protein (.1) AT1G09600 306 / 2e-95 Protein kinase superfamily protein (.1) AT1G54610 292 / 2e-91 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022043 [exp] 776 / 0 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 617 / 0 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 611 / 0 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10001715 [exp] 315 / 4e-100 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10028890 [exp] 316 / 2e-99 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 311 / 5e-99 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 315 / 6e-99 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 305 / 2e-96 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10039836 [exp] 306 / 3e-96 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024600 [exp] 719 / 0 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.012G003700 [exp] 698 / 0 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.004G226900 [exp] 334 / 4e-106 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 322 / 8e-103 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 320 / 6e-102 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 320 / 3e-101 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G119400 [exp] 321 / 5e-101 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 317 / 5e-101 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G073100 [exp] 315 / 2e-99 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G003700 [exp] 316 / 3e-99 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042588 pacid=23181855 polypeptide=Lus10042588 locus=Lus10042588.g ID=Lus10042588.BGIv1.0 annot-version=v1.0 ATGTCGATTGCAGCCACTGGCCAGCTCAACCTGACCGAGTATTCAACATGGGGATCCCGGACCGTTGATAAGTTTGAGAAGCTGGAACAAATTGGCGAGG GAACTTACGGTCAAGTTTACATGGCTCGTGAGATAGCGACAGGAGAAATAGTCGCTCTTAAGAAGATAAGAATGGACAACGAGAGAGAAGGATTCCCGAT CACTGCCATTCGTGAAATCAAAATTCTAAAGAAGCTTCATCATGATAATGTAATTCAGTTAAAAGAGATAGTGACATCTCCAGGTAACTATTTTGCGAAT GTAGAGCATAGTATGTCGGCTTTCGTGACTGAAAGTGCTCATACCAAACCTTTATTCACCTTGTTGATTGCTTTTACGCAGCTCTCTAAAGTTCTTGTTA TTGCTGTGCAGGTCCTGAAAGGGACGATCAAGGGAGACCTGGCAAATGGTAATAAGTATAAAGGTGGTATCTACATGGTCTTTGAGTACATGGATCACGA TTTAACTGGACTTTCTGATCGTCCAGGAATGAGATTTTCCGTTCCTCAAATTAAGTGCTACATGAAGCAGCTATTAACTGGGCTTCATTATTGCCACGTA AATCAAGTACTACATCGTGATATCAAAGGTTCTAATCTTCTTATAGATAACGAGGGCAACCTAAAGCTTGCTGATTTTGGGCTTGCTCGATCATTCTCGA ATGATCATAATGCAAATCTTACAAACCGTGTTATTACTTTATGGTACAGACCACCGGAGTTGCTCCTTGGGGCAACAAAGTATGGTCCAGCTGTTGATAT GTGGTCTGTTGGCTGCATCTTTGCTGAGCTTCTCCATGGGAAGCCTATTTTCCCTGGAAAAGATGAGCCGGAACAACTAAACAAGATTTTCGAGCTTTGT GGGGCACCTGATGAGGTTATCTGGCCTGGTGTTTCCAAAATTCCTTGGTATAACAACTTCAAGCCTTCAAGGCCATTGAAGCGACGGCTAAGGGAGGTCT TCAGACATTTCGATCGTCATGCTTTGGAATTGCTGGAGAAAATGCTTACTCTTGATCCTGCTCAGAGAATATCTGCCAAAGATGCACTGGATGCGGAGTA TTTCTGGACGGATCCATTACCTTGTGATCCCAAGACTTTGCCGAAATACGAATCCTCGCACGAGTTCCAGACAAAGAAGAAGAGGCAACAGCAGAGACAG CACGAAGAGAATGCGAAACGTCAGAAGCTACAGCATCCGCAACCACATAGCCGCCTTCCTCCGATTCAGCAATCCGGGCAGGCACATCAGATGAGGTCGG GTCCTAATCACGGCTCGCACCCTCCAGTACCGGCAGGAGCGGGCCACCATTATGGCAAGCCACGTGGACCGGCAGGCGGGCCGGGCAGGTATCCTCAAAG CGGAGCCAGTGGTGGATACAACAACCACCCGAATCGCGGCGGTCAAGGAGGTGGCGGGGGAGGTTATGGTGGTAGCGGACAGTATCCTCCGCCGGGCGGC CGGGCCCCGCCGTACAACTCGAGTGGGGTGCCTCCTGGCGGCGCTCCTCGTGGCGGTGGTGGAGGTGGTAGCGGGTTTGCAGGTGCTGCGCCGAATTATC CTCAAGTTGGTCCTTATGGAGGTTCTGGTGCTGGCCGCGGATCGAATACCATGGGTGGAAACCGGAACCAGTACGGAAGTTGGCAGTAA
AA sequence Show only first row Show all	>Lus10042588 pacid=23181855 polypeptide=Lus10042588 locus=Lus10042588.g ID=Lus10042588.BGIv1.0 annot-version=v1.0 MSIAATGQLNLTEYSTWGSRTVDKFEKLEQIGEGTYGQVYMAREIATGEIVALKKIRMDNEREGFPITAIREIKILKKLHHDNVIQLKEIVTSPGNYFAN VEHSMSAFVTESAHTKPLFTLLIAFTQLSKVLVIAVQVLKGTIKGDLANGNKYKGGIYMVFEYMDHDLTGLSDRPGMRFSVPQIKCYMKQLLTGLHYCHV NQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGATKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELC GAPDEVIWPGVSKIPWYNNFKPSRPLKRRLREVFRHFDRHALELLEKMLTLDPAQRISAKDALDAEYFWTDPLPCDPKTLPKYESSHEFQTKKKRQQQRQ HEENAKRQKLQHPQPHSRLPPIQQSGQAHQMRSGPNHGSHPPVPAGAGHHYGKPRGPAGGPGRYPQSGASGGYNNHPNRGGQGGGGGGYGGSGQYPPPGG RAPPYNSSGVPPGGAPRGGGGGGSGFAGAAPNYPQVGPYGGSGAGRGSNTMGGNRNQYGSWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10042588 [exp]	0	1
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	1.7	0.9347
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10002835 [exp]	5.7	0.9262
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	6.5	0.9289
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10027886 [exp]	10.2	0.9233
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	10.6	0.9100
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	11.4	0.9194
AT5G05520			Outer membrane OMP85 family pr...		Lus10017441 [exp]	15.5	0.9174
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	17.3	0.8973
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	20.8	0.9168
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	28.1	0.9053

Compare expression of checked genes

Lus10042588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.