Plant FIBer expression Database

Lus10042590 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032910
[exp]
262 / 1e-89 ND /
Lus10006395
[exp]
224 / 1e-74 ND /
Lus10033051
[exp]
223 / 5e-74 ND /
Lus10015895
[exp]
190 / 5e-62 ND /
Lus10000882
[exp]
173 / 4e-56 ND /
Lus10016136
[exp]
177 / 1e-54 ND /
Lus10008161
[exp]
174 / 1e-51 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Lus10024749
[exp]
164 / 1e-51 ND /
Lus10003831
[exp]
149 / 8e-44 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10042590 pacid=23181988 polypeptide=Lus10042590 locus=Lus10042590.g ID=Lus10042590.BGIv1.0 annot-version=v1.0
ATGAGCACTTCGGGAGATTCATCGCTCAGTAAGGGTGACGGCATCAATTACACTGAACACTTTCTATCCGACGATAATTACGATACAGTTGATGAAGCAT
TTCAAGCCGCCAAACGAATTGCCCAGACGTTTAATTTCACGCTGACTAAAGGATCGAACACAATCAATTCGGCGGAGCGAGACTACCGTGTGTATCTATA
CTGCTCTCGAGGACCGATGCGTAAATCATCGGCTTCCACTCCTCCGAAACGGCTTACGAAAACAAAAAAGTGTAACTGCCCCTTCAAACTGGCGGTGAGG
TGTCGGGTCGTGCGTGGGGAGTGGAAGTTCTTCATCGACGGGGTTGGCCAAACCGGCTGTGCGACCCCCGCCACCGATCGTACAATAACAAAAGGTTACC
ATAACCATTTTTTCGTGCCATACCCCGAAGCTAGCACAGAAAATAATGCACTTACGAGTGAAGAGAAGAGCGAAATACGGGACATGCTTGCGACGCACAC
CCAGCCGAACAAGATTAGGTACGCTCTCAACAAGAAGTTCAATTCTCACCATAATATAAATCAGATATACAACGAGTCCTACAAGGTTTGGAAACCCTAA
AA sequence
>Lus10042590 pacid=23181988 polypeptide=Lus10042590 locus=Lus10042590.g ID=Lus10042590.BGIv1.0 annot-version=v1.0
MSTSGDSSLSKGDGINYTEHFLSDDNYDTVDEAFQAAKRIAQTFNFTLTKGSNTINSAERDYRVYLYCSRGPMRKSSASTPPKRLTKTKKCNCPFKLAVR
CRVVRGEWKFFIDGVGQTGCATPATDRTITKGYHNHFFVPYPEASTENNALTSEEKSEIRDMLATHTQPNKIRYALNKKFNSHHNINQIYNESYKVWKP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10042590
[exp]
0 1
AT5G13160 PBS1 avrPphB susceptible 1, Protein... Lus10032010
[exp]
4.9 0.8969
AT4G27570 UDP-Glycosyltransferase superf... Lus10039236
[exp]
9.3 0.8715
AT1G54870 NAD(P)-binding Rossmann-fold s... Lus10034047
[exp]
9.6 0.8495
AT2G17080 Arabidopsis protein of unknown... Lus10012368
[exp]
17.7 0.8053
AT1G26480 GF14IOTA, GRF12 general regulatory factor 12 (... Lus10004652
[exp]
17.7 0.8438
AT5G27230 Frigida-like protein (.1) Lus10006522
[exp]
21.8 0.7925
AT1G13570 F-box/RNI-like superfamily pro... Lus10034414
[exp]
23.9 0.7811
AT3G29760 Haloacid dehalogenase-like hyd... Lus10027135
[exp]
25.0 0.8063
AT3G56710 SIB1 sigma factor binding protein 1... Lus10026165
[exp]
30.9 0.8016
AT3G13400 SKS13 SKU5 similar 13 (.1) Lus10010358
[exp]
35.7 0.7585

Lus10042590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.