Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63170 264 / 5e-88 Chalcone-flavanone isomerase family protein (.1) AT2G26310 113 / 1e-29 Chalcone-flavanone isomerase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022045 [exp] 471 / 1e-169 AT3G63170 283 / 7e-96 Chalcone-flavanone isomerase family protein (.1) Lus10022046 [exp] 417 / 3e-148 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1) Lus10042592 [exp] 410 / 2e-145 AT3G63170 298 / 2e-101 Chalcone-flavanone isomerase family protein (.1) Lus10032083 [exp] 137 / 5e-39 AT3G63170 140 / 3e-40 Chalcone-flavanone isomerase family protein (.1) Lus10014620 [exp] 99 / 6e-25 AT3G63170 112 / 3e-30 Chalcone-flavanone isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052200 [exp] 303 / 3e-103 AT3G63170 290 / 2e-98 Chalcone-flavanone isomerase family protein (.1) Potri.006G219600 [exp] 118 / 2e-30 AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3) Potri.018G048500 [exp] 118 / 3e-30 AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10042591 pacid=23181874 polypeptide=Lus10042591 locus=Lus10042591.g ID=Lus10042591.BGIv1.0 annot-version=v1.0 ATGGTAGTGCTGCGATTTCCATCCTTGTTTCCACAGCAAAGTAACCAACCCAACGTTAGTTCGAAGGCAACAACCACCACCGCCTCCCACTCCTCCGCCG CAGCTGTCGTCGCCGTCGCCACCGGTGCCGCCACTTTCGCTGGCCTTGCCGCCGTGATTAACCTAAGAGACTGGAATTCCTCCGTGGTCGAAAATGCGCT TATTTCGCTCTTCTCCTGCGACCGCTCCTCCCTACCGTGGGCCTCCCTCTCCCTCGTCGACTGCTCAGATTCCTACGTCGTCGAATCAAAGACCGGAGAG TTGTTTCCCAGCGTTATTTCTGGTAATCGGCAGCTTTTGGGCATTGGATTGAGGAGGAAGAGCCTGTTAGGTTTGAAGAACATCGATGTCTACGCATTTG GTGTGTATGCTGACGAGGAGGAAGTGCGGAAATGTCTGGACAAGAAACACGCAACTCTTTCTGCCTCTGAACTCAAGCAAGAACTGCTTGAGGCGGATGT TTGCTTGACCGTTAGGCTTCAGATACTCTACGGTAAGCTAAGCATTCACTCTGTACGAAGTGCATTTGAGGATTCTGTTGGGAGAAGGCTGCAACAGTTT GGGGGGCTGGATGACAAAGAGGTTCTGCAACGGTTCACTTCTCTGTTCAAGGATGAATATAAAATACCACGGGGATCTGTTATAGAACTGTCAAGGGAAC GAGGCCATGTGCTTCGCACAACAATTGAGGGGAAGGACATCGGCAGCATCGAGAGCAAGGTCTTGTGTCGGTCGATCCTTGATTTACATATTGGTGAAGA TCCGTTTGACAGGCAGGCCAAAGAAGAATTTGAGAGTAATTTGTCATCTCTCCTGCACAAGTAG
AA sequence Show only first row Show all	>Lus10042591 pacid=23181874 polypeptide=Lus10042591 locus=Lus10042591.g ID=Lus10042591.BGIv1.0 annot-version=v1.0 MVVLRFPSLFPQQSNQPNVSSKATTTTASHSSAAAVVAVATGAATFAGLAAVINLRDWNSSVVENALISLFSCDRSSLPWASLSLVDCSDSYVVESKTGE LFPSVISGNRQLLGIGLRRKSLLGLKNIDVYAFGVYADEEEVRKCLDKKHATLSASELKQELLEADVCLTVRLQILYGKLSIHSVRSAFEDSVGRRLQQF GGLDDKEVLQRFTSLFKDEYKIPRGSVIELSRERGHVLRTTIEGKDIGSIESKVLCRSILDLHIGEDPFDRQAKEEFESNLSSLLHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042591 [exp]	0	1
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10010235 [exp]	5.8	0.8928
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10024191 [exp]	9.3	0.8218
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	11.7	0.8893
AT4G20040			Pectin lyase-like superfamily ...		Lus10038369 [exp]	12.2	0.8254
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10012598 [exp]	14.4	0.7946
					Lus10034878 [exp]	17.7	0.8159
AT3G24460			Serinc-domain containing serin...		Lus10017728 [exp]	17.9	0.8277
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	20.9	0.8558
AT3G56820			unknown protein		Lus10012105 [exp]	22.2	0.8551
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	23.6	0.8078

Compare expression of checked genes

Lus10042591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.