Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63170 261 / 5e-87 Chalcone-flavanone isomerase family protein (.1) AT2G26310 117 / 3e-31 Chalcone-flavanone isomerase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022046 [exp] 386 / 5e-136 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1) Lus10022045 [exp] 366 / 4e-128 AT3G63170 283 / 7e-96 Chalcone-flavanone isomerase family protein (.1) Lus10042591 [exp] 354 / 2e-123 AT3G63170 274 / 5e-92 Chalcone-flavanone isomerase family protein (.1) Lus10032083 [exp] 140 / 4e-40 AT3G63170 140 / 3e-40 Chalcone-flavanone isomerase family protein (.1) Lus10014620 [exp] 102 / 4e-26 AT3G63170 112 / 3e-30 Chalcone-flavanone isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052200 [exp] 293 / 2e-99 AT3G63170 290 / 2e-98 Chalcone-flavanone isomerase family protein (.1) Potri.006G219600 [exp] 120 / 3e-31 AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3) Potri.018G048500 [exp] 120 / 3e-31 AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10042592 pacid=23181771 polypeptide=Lus10042592 locus=Lus10042592.g ID=Lus10042592.BGIv1.0 annot-version=v1.0 ATGGTAATGTTGCGATTTCCATTCTCGTTTCCACAGCCAAGTAACCAACCCAACGTTATTTCCAAGGCAACAACCACCGCTTCCCGCTCCTTCTCCGCCG TGGCTGTCGTCGTCCTCGCCGCCCGAGTCGCCGTCGCCGCCGGTGCCGCCACTTTCGCTGGCATTGCCGCCGTCAAGCACCTAAGAGACTCGAATTCCTC GGTGGTCGAAAATGCGCTTAATTCGCTCCTCTCCGGCGGACGCTCCTCCCTGCCGTGGGGCTCTCTCTCCCTCGTCGACGGCTCAGCTTCTTCCTCTGTC GTCGAATCGAAGACCGGAGAGTCATTTCCTAGCGTTATTGCTGGCAATCGGCAGCTTTTGGGCATTGGATTGAGGAGGAAGAGCCTACTGGGTTTGAAGA ATATCGATGTCTACGCATTTGGTGTGTATGCTGACAAAGACGAAGTGCAGAAATGTCTAGATAAGAAACAAGCAACTCTTTCTGCCTCTGAACTCAAGCA AGAACTGCTTGAGGCTGATGTTTGCTTGACCGTTAGGCTTCAGATAGTGTACGGTAAGCTAAGCATTCGCTCTGTTCGAAATGCATTTGAAGATTCTGTT GGGAGCAGGCTACAAAAGTTCGGGGGACCCAATAACAAAGAGGTTCTGCAAAGGTTCACTTCTCTGTTCAAGGATGAATATAAAATACCACGGGGTTCGG TTATAGAACTGTCAAGGGAACGAGGCCATGTCCTTCGCACAACAATTGAGGGGAAGGACGTCGGCAGCATCGAGAGCAAGGCCCTGTGTCGGTCGATCCT TGATCTATATATTGGTGAAGAACCGTTTGACAAGCAGGCCAAAGAAGAAATTGAGAGTAATTTGTCATCTCTCCTCCAGAAGTAG
AA sequence Show only first row Show all	>Lus10042592 pacid=23181771 polypeptide=Lus10042592 locus=Lus10042592.g ID=Lus10042592.BGIv1.0 annot-version=v1.0 MVMLRFPFSFPQPSNQPNVISKATTTASRSFSAVAVVVLAARVAVAAGAATFAGIAAVKHLRDSNSSVVENALNSLLSGGRSSLPWGSLSLVDGSASSSV VESKTGESFPSVIAGNRQLLGIGLRRKSLLGLKNIDVYAFGVYADKDEVQKCLDKKQATLSASELKQELLEADVCLTVRLQIVYGKLSIRSVRNAFEDSV GSRLQKFGGPNNKEVLQRFTSLFKDEYKIPRGSVIELSRERGHVLRTTIEGKDVGSIESKALCRSILDLYIGEEPFDKQAKEEIESNLSSLLQK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042592 [exp]	0	1
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	5.0	0.8655
AT5G41270			unknown protein		Lus10035306 [exp]	7.9	0.8411
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	8.7	0.8271
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	11.0	0.8574
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	12.4	0.8274
AT2G16030			S-adenosyl-L-methionine-depend...		Lus10018506 [exp]	13.4	0.8225
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10039661 [exp]	15.0	0.8195
AT2G29180			unknown protein		Lus10016512 [exp]	15.1	0.8568
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	19.3	0.8258
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	19.5	0.8243

Compare expression of checked genes

Lus10042592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.