Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02780 784 / 0 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G79460 264 / 5e-76 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 148 / 3e-36 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT2G24210 102 / 3e-22 AtTPS10 terpene synthase 10 (.1) AT4G16740 94 / 1e-19 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 91 / 1e-18 AtTPS02 terpene synthase 02 (.1) AT3G25810 90 / 2e-18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 82 / 7e-16 ATTPS21 terpene synthase 21 (.1.2) AT3G25820 80 / 3e-15 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25830 79 / 8e-15 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022047 [exp] 1495 / 0 AT4G02780 812 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006925 [exp] 1039 / 0 AT4G02780 759 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004323 [exp] 969 / 0 AT4G02780 733 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006917 [exp] 316 / 8e-101 AT4G02780 210 / 3e-62 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 251 / 6e-71 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 220 / 9e-60 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 217 / 1e-59 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 210 / 5e-57 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 206 / 3e-55 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210300 [exp] 1032 / 0 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.002G052100 [exp] 1021 / 0 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 268 / 2e-77 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 264 / 4e-76 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 219 / 6e-60 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.017G041700 [exp] 112 / 2e-25 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023008 [exp] 110 / 5e-25 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023006 [exp] 108 / 2e-24 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 108 / 3e-24 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.007G118600 [exp] 106 / 2e-23 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10042593 pacid=23181825 polypeptide=Lus10042593 locus=Lus10042593.g ID=Lus10042593.BGIv1.0 annot-version=v1.0 ATGGAAATCGAGTTTGGGGAAGAATGCTTTCTCTTCCCTCCAACTTCCCTTTTTATAGTTGTAGCCGGATTTGGAGGGTCGGTGCACACCGTGCACCTTC CTAAGGTGTCCGTTCCACATACCAAAAGTAGGGGAACGGCGTGCAGTGACGCACGCCGTGCTGCTTCAATTCTTCTCCATCCTGCGACTCAAAAAGGGAG GAACTGCGTGCAGTGGTGCACGCCATGCCTTTGGTTTGAGGCCGTGCTATGGAGTGCCTTTATGGACTACACGGCATGCAGTCCCTCTGCTGCGCCAATT CCATTTTCAACTTCTCTTTTGAACTCCAATCGCTCTCCACACCACGCCCTTGGCTTCATGGTCAAATCACTTATTTTCATAGTACCTGTAGAATACGAAG CCGACGTGTTTCAACAAAATGGTTCGCCAGTGATAAAGTGGCACGACATTGTGGAAGATGACATTGAACAGGAAACTCTCAAGGTGTCGGTATCGAGTGA GATAAACAAAAGGGTTGGCATAATAAAATCAATGCTGGCCTCCATGGAAGACGGAGAAATCAATGCCTCAGCATACGACACCGCTTGGGTTGCTTTGGTT AAAGACGTGAACGGCAGCGGCGGTCCCCAATTCCCCGAAAGCCTCGAATGGATTTCCAACAATCAGCTCGAAGACGGCTCGTGGGGCGACGTCCAGCTTT TCCAGGCTCATGATCGCCTCCTCAACACTCTCGGATGCGTCGTGGCCCTCACCACCTGGAACTTACATCCCGACAAATGCGCCAAAGGGATGAAGTTCTT CAACGAGAACCTGAAGAAGCTAGAGGATGAGAACATGGAACACATGCCTATTGGGTTCGAAGTTGCTTTCCCTTCGCTTCTCGAGCTGGCTCGTAGCTTG AACCTCGACGTCAACCATGATTCCCCTGTTCTCCAGGAGATCTATGCCGCCAGAAAAATCAAGCTCAACAAGATTCCAAAAGAAGTCCTGCACAACTACC CGACCACTCTACTCCATAGCTTGGAAGGATTGCCGGATCTGGACTGGGATAAGCTTCTCAAGTTGCAGAGTGAAGATGGGTCCTTCTTGTTTTCCCCTGC TTCAACTGCTTGTGCTTTGGCTCAGACCAATGATCAAAAGTGCTTGGGGTATCTAAGCAAGATGGTCCAGAAATTCAGAGGAGGAGTTCCAAATGTTTAC CCAGTTGATCTGTTTGAGAACATATGGGCAATCGATCGGTTGCAGAGACTGGGAATTTCCAGATATTTCCAGCCAGAGATTACTAAATGCGTTGACTACA TTGAAAAATATTGGGATGAAAGGGGGATCTGCTGGGCAAGAAACTCGGAGGTGCATGACATTGACGACACGGCTATGGGTTTCAGGATTCTGAGAACTCA CGGCCGTAAAGTTTCTCCAGATGTGTTCAAGTACTTTGAGAAGAACGGAGAGTTCTTCTGCTTCGCCGGACAGTCAAACCAGGCGATTACCGGTCTTTTC AACTTGTACAGAGCATCTCAGGTGTTGTTCCCAGGGGAGGAAATCCTGGAGAACGCGAAACAATATGCCTATAAGTTCCTCAAGGAGAAGCAGGCTTCCG ACGAGCTCCTCGACAAATGGATCATCACCAAGGACTTGCCCGGAGAGGTCGGACTTGCATTGGATGTCCCATTCTATGCGAGTTTGCCTAGAGTTGAGAA CAGGTTCTTCATCGAACAGTACGGCGGCGAGGATGATGTCTGGATCGGCAAAACTCTTTACAGGATGCCTATTGTAAACAATAACTACTATTTGGAGCTA GCCAAGATTGACTACAACAATTGCCAAACAATCCACCGTATGGAATGGGAAAATCTTCAACAGTGGTACGAGGAAAGTGGAGTGGGAGAATTTGGAGTGA GCAAGAGGAGCCTGCTGCAAGGGTACTACATGGCGGCGGCCAGCGTGTTCGAGCAGAACAGATCAGCAGAGAGAATGGCGTGGGCCAAGACCTCCGCGTT GCTGGAAGCGATCCAGTTGTACTTCCGCGTCAACAACTCAAAGGAGGCGCGCGCATCATTCGTCCACGAGTTCAGCCACGGGATCGGCATACGTTCCTGG ACCACTAACGGCGTGAGTAAAAAGACCACAACCAGGCAGGACCTAGTGAAACTATTATTGGGCACACTAAACCACATTTCTCTCGACGCACTCGTGGCTA ACGGACGCGACATCGGCCAAGCCCTCCGCAGATCCTGGGAAGAATGGATGGTGAAATGGGAAGAGGAAGGAGACAGAGGAGTTGGGGAGGCAGAGCTTGT GGTGAAGACACTGAACTTGGCAGCTGGGCGTTCGAGTTCCGAGGAGTTTATGATTCTAGCCACTACTGAAGAAGAAGATAACTCTCTGTATCACAAGCTT GCAAACCTCACCAATAACATCTGCCACCAACTTATCCGTTTCAAGGACTCAAAGGAAGAAGAGGACAAAAGCAGGAATCTGCATACTACAACGCCGGAGA TAGAGAGTGGGATGCAGGAGTTGGTCCGCTTGGTGACTCAAACGCCGTCAGATGGCAATGAAGATATGAAGCAGAGGTTTATGGACGTGGCCAAGACATT CTACTACTCCGCCGTTTGTGAGCCTGGAACCGTTAACCACCACATTGCCAAAGTCCTGTTTGAGAGAGTTCATTAG
AA sequence Show only first row Show all	>Lus10042593 pacid=23181825 polypeptide=Lus10042593 locus=Lus10042593.g ID=Lus10042593.BGIv1.0 annot-version=v1.0 MEIEFGEECFLFPPTSLFIVVAGFGGSVHTVHLPKVSVPHTKSRGTACSDARRAASILLHPATQKGRNCVQWCTPCLWFEAVLWSAFMDYTACSPSAAPI PFSTSLLNSNRSPHHALGFMVKSLIFIVPVEYEADVFQQNGSPVIKWHDIVEDDIEQETLKVSVSSEINKRVGIIKSMLASMEDGEINASAYDTAWVALV KDVNGSGGPQFPESLEWISNNQLEDGSWGDVQLFQAHDRLLNTLGCVVALTTWNLHPDKCAKGMKFFNENLKKLEDENMEHMPIGFEVAFPSLLELARSL NLDVNHDSPVLQEIYAARKIKLNKIPKEVLHNYPTTLLHSLEGLPDLDWDKLLKLQSEDGSFLFSPASTACALAQTNDQKCLGYLSKMVQKFRGGVPNVY PVDLFENIWAIDRLQRLGISRYFQPEITKCVDYIEKYWDERGICWARNSEVHDIDDTAMGFRILRTHGRKVSPDVFKYFEKNGEFFCFAGQSNQAITGLF NLYRASQVLFPGEEILENAKQYAYKFLKEKQASDELLDKWIITKDLPGEVGLALDVPFYASLPRVENRFFIEQYGGEDDVWIGKTLYRMPIVNNNYYLEL AKIDYNNCQTIHRMEWENLQQWYEESGVGEFGVSKRSLLQGYYMAAASVFEQNRSAERMAWAKTSALLEAIQLYFRVNNSKEARASFVHEFSHGIGIRSW TTNGVSKKTTTRQDLVKLLLGTLNHISLDALVANGRDIGQALRRSWEEWMVKWEEEGDRGVGEAELVVKTLNLAAGRSSSEEFMILATTEEEDNSLYHKL ANLTNNICHQLIRFKDSKEEEDKSRNLHTTTPEIESGMQELVRLVTQTPSDGNEDMKQRFMDVAKTFYYSAVCEPGTVNHHIAKVLFERVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10042593 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	3.9	0.9894
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	4.5	0.9874
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	4.6	0.9872
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	7.2	0.9845
AT1G21326			VQ motif-containing protein (....		Lus10012286 [exp]	7.3	0.9820
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	8.9	0.9843
AT1G17860			Kunitz family trypsin and prot...		Lus10042301 [exp]	10.4	0.9795
					Lus10002336 [exp]	11.8	0.9780
AT1G13360			unknown protein		Lus10041461 [exp]	14.1	0.9575
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10030930 [exp]	14.7	0.9331

Compare expression of checked genes

Lus10042593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.