Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03150 348 / 6e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G13780 102 / 8e-28 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G38130 45 / 4e-06 ATMAK3 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT5G16800 41 / 0.0002 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022048 [exp] 347 / 3e-124 AT1G03150 333 / 6e-119 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10016378 [exp] 97 / 1e-25 AT5G13780 292 / 5e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10041514 [exp] 42 / 8e-05 AT2G38130 287 / 3e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10019745 [exp] 39 / 0.0003 AT5G13780 112 / 6e-33 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10012579 [exp] 40 / 0.0004 AT2G38130 286 / 7e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210400 [exp] 348 / 1e-124 AT1G03150 350 / 2e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.002G052000 [exp] 286 / 7e-101 AT1G03150 287 / 4e-101 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.009G056600 [exp] 103 / 5e-28 AT5G13780 307 / 5e-108 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G261800 [exp] 99 / 2e-26 AT5G13780 301 / 8e-106 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G142100 [exp] 50 / 1e-07 AT2G06025 347 / 1e-120 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.011G139300 [exp] 43 / 3e-05 AT2G38130 294 / 1e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G435300 [exp] 40 / 0.0003 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G429200 [exp] 40 / 0.0003 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G432400 [exp] 40 / 0.0003 AT2G38130 296 / 4e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10042595 pacid=23181934 polypeptide=Lus10042595 locus=Lus10042595.g ID=Lus10042595.BGIv1.0 annot-version=v1.0 ATGACGACGATAAAGCGCTTCTGCTGCAACGACCTTCTCCGATTCGCTTCCGTCAACCTCGACCATCTCACCGAAACCTTCAACATGTCATTTTACATGA CCTACTTGGCGAGATGGCCTGATTATTTCCACGTCGCCGATGCCCCCGGCAACAAAGTTATGGGATACATTATGGGGAAAGTGGAAGGACAAGGCGAATC GTGGCATGGTCACGTGACGGCGGTTACGGTGGCTACAGAGTACCGCCGGCAGCAATTGGCCAAGAAGCTTATGAACCTGCTAGAAGATATCAGCGACAAG ATTGACAAGGGTTACTTCGTGGATCTTTTTGTGAGAGCATCTAATACACCAGCCATCAAGATGTATGAGAAGCTTGGATATATAATTTACAGAAGGGTTC TCCGGTACTACTCTGGAGAGGAAGATGGCTTAGATATGAGGAAAGCTCTTTCTCGTGACGTGGAGAAGAAATCGATTATCCCTCTTAAGCGACCGATTAC TCCTGATGAGTTAGAGTACGATTAA
AA sequence Show only first row Show all	>Lus10042595 pacid=23181934 polypeptide=Lus10042595 locus=Lus10042595.g ID=Lus10042595.BGIv1.0 annot-version=v1.0 MTTIKRFCCNDLLRFASVNLDHLTETFNMSFYMTYLARWPDYFHVADAPGNKVMGYIMGKVEGQGESWHGHVTAVTVATEYRRQQLAKKLMNLLEDISDK IDKGYFVDLFVRASNTPAIKMYEKLGYIIYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPITPDELEYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	0	1
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10022048 [exp]	1.0	0.8703
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	3.9	0.8357
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	4.9	0.8118
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	5.5	0.8389
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	6.5	0.8208
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Lus10019103 [exp]	9.7	0.7354
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10010292 [exp]	9.9	0.8072
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	10.0	0.8245
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	10.6	0.7908
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024849 [exp]	11.2	0.7721

Compare expression of checked genes

Lus10042595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.