Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008312 [exp] 140 / 3e-42 AT4G02210 53 / 4e-08 unknown protein Lus10037335 [exp] 76 / 1e-16 AT5G27260 69 / 7e-13 unknown protein Lus10012077 [exp] 72 / 2e-15 AT5G27260 50 / 5e-07 unknown protein Lus10014160 [exp] 71 / 5e-15 ND 47 / 6e-06 Lus10000529 [exp] 66 / 8e-14 ND 37 / 0.005 Lus10035759 [exp] 67 / 1e-13 AT5G27260 74 / 6e-15 unknown protein Lus10032348 [exp] 67 / 2e-13 AT5G27260 52 / 2e-07 unknown protein Lus10007175 [exp] 65 / 1e-12 AT5G27260 67 / 2e-12 unknown protein Lus10019607 [exp] 64 / 1e-12 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G088750 [exp] 42 / 6e-05 AT4G02550 79 / 3e-17 unknown protein Potri.006G265900 [exp] 40 / 0.0006 AT2G24960 761 / 0.0 unknown protein Potri.009G022650 [exp] 39 / 0.0006 AT4G02550 79 / 7e-17 unknown protein Potri.002G200600 [exp] 39 / 0.0007 AT4G02210 471 / 1e-163 unknown protein Potri.006G196716 [exp] 39 / 0.0008 AT4G02550 69 / 2e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042596 pacid=23181669 polypeptide=Lus10042596 locus=Lus10042596.g ID=Lus10042596.BGIv1.0 annot-version=v1.0 ATGGATAATTGCTTAATTGATGTTATGTTGGAAATGGTGAAGAACAACCAATATCAAAATGGAACTTTCAAACCTGGAACGTACAAAGAGATGGAAAGGC AGCTAAATTTGCTTGATCCTCGATGTGAAGTGAAGGTGAGCCCAAATATATTATCTCGGTTGAAGACTTTAAAAAAGAAGTTCAATGGAGTTAAGGAGTT GAGGAATTTAAGCGACACGAGATGGAACGATACATTAAAGCAAGTCGAAATGGACCCCATCATATATATCAATACGTCAAGAAATGATGATCTAGAAATC ATATATGACAACTCAACTACAACTGGAAAGGGATCAAGGGGTATCACCGATCCTATACCTATTGAGGATGATATACTTGATATTGACACCATGGAGGCTG GAGAAGATTTTAAGTCGTATGGAGTTAATGATACCATGGCAGCTGGAGAAGAGATTAACAAAGGGGTTGAGGAATATGAAGCTGCATAA
AA sequence Show only first row Show all	>Lus10042596 pacid=23181669 polypeptide=Lus10042596 locus=Lus10042596.g ID=Lus10042596.BGIv1.0 annot-version=v1.0 MDNCLIDVMLEMVKNNQYQNGTFKPGTYKEMERQLNLLDPRCEVKVSPNILSRLKTLKKKFNGVKELRNLSDTRWNDTLKQVEMDPIIYINTSRNDDLEI IYDNSTTTGKGSRGITDPIPIEDDILDIDTMEAGEDFKSYGVNDTMAAGEEINKGVEEYEAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02210			unknown protein		Lus10042596 [exp]	0	1
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	2.8	0.8896
AT2G45990			unknown protein		Lus10036369 [exp]	5.1	0.8832
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	6.9	0.8620
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	7.9	0.8624
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10015918 [exp]	12.5	0.8492
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	18.4	0.8305
					Lus10041093 [exp]	19.6	0.8399
AT3G13000			Protein of unknown function, D...		Lus10037293 [exp]	24.2	0.8083
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	25.0	0.8250
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	25.8	0.8280

Compare expression of checked genes

Lus10042596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.