Plant FIBer expression Database

Lus10042598 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35980 70 / 5e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041889
[exp]
82 / 1e-20 AT4G35980 141 / 1e-45 unknown protein
Lus10028436
[exp]
82 / 2e-20 AT4G35980 139 / 9e-45 unknown protein
Lus10004021
[exp]
70 / 4e-14 AT3G60850 739 / 0.0 unknown protein
Lus10030268
[exp]
65 / 2e-12 AT3G60850 739 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G111900
[exp]
73 / 4e-17 AT4G35980 139 / 5e-45 unknown protein
PFAM info
Representative CDS sequence
>Lus10042598 pacid=23181846 polypeptide=Lus10042598 locus=Lus10042598.g ID=Lus10042598.BGIv1.0 annot-version=v1.0
ATGATGCATTTTCCTTTTCCAAAGTACCAATTTTTTAGTCTCCCTGTTGTGATTGAATATACTTGGCAGATTAAAGAGAAAAAGCAAGCTGCAGCTGATG
TATTGTTCCACTACTCCAAGTTTGTGATGACATGTATTGGGAACCAAGTTCGCCCCTTTGACATGAGGCTGCATCTGATGAAGCGAAGGGATCAAGACAA
CTTGGATGTGTGGCTCCCCGCTGATGAAGAGCGGCGGCTTCTTGGCGCTGTTGTTACCGTCGGGATTGGTGTGATCGACGTAGGCGGAGGCATTTTTGTT
GGAGGAGGATTGGATTGGAGAGTTCGGGGAAGAGGAGCGGAGGTAGAGATCTTCTTGAATGGACTGCTGAGATTCGAAAAGGTGGTGGTGATGATTGGGG
ATTATGATCTGGGAGGGAGGTTAGCCCAATATCGTTGTGGTGGTGGCGGTGACTGTGGAAGAGATCGGCTTCCATTTTCTTGGGAGGATCCATCGCCGGA
GGCTTATCGGAAGAAGGACAATCCAGGCAGAGAGGGAGATAGAAAGGGTAGAGAGAGTCAAAGCTCGGAACAGATGCTGTCAGGTCGGGTCATTTAA
AA sequence
>Lus10042598 pacid=23181846 polypeptide=Lus10042598 locus=Lus10042598.g ID=Lus10042598.BGIv1.0 annot-version=v1.0
MMHFPFPKYQFFSLPVVIEYTWQIKEKKQAAADVLFHYSKFVMTCIGNQVRPFDMRLHLMKRRDQDNLDVWLPADEERRLLGAVVTVGIGVIDVGGGIFV
GGGLDWRVRGRGAEVEIFLNGLLRFEKVVVMIGDYDLGGRLAQYRCGGGGDCGRDRLPFSWEDPSPEAYRKKDNPGREGDRKGRESQSSEQMLSGRVI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G35980 unknown protein Lus10042598
[exp]
0 1
AT5G58610 PHD finger transcription facto... Lus10018681
[exp]
1.0 0.8859
AT3G16970 Plant self-incompatibility pro... Lus10030565
[exp]
1.4 0.8483
AT5G22260 MS1 male sterility 1, RING/FYVE/PH... Lus10030773
[exp]
3.0 0.8412
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Lus10023640
[exp]
5.7 0.7811
AT3G28480 Oxoglutarate/iron-dependent ox... Lus10014502
[exp]
6.0 0.8150
AT5G04620 BIO4, ATBIOF biotin 4, biotin F (.1.2) Lus10009662
[exp]
7.4 0.8268
AT5G45890 SAG12 senescence-associated gene 12 ... Lus10020723
[exp]
8.8 0.7544
AT3G47600 MYB ATMYB94, AtMYBC... myb domain protein 94 (.1) Lus10005245
[exp]
9.0 0.7912
AT4G26120 Ankyrin repeat family protein ... Lus10024843
[exp]
13.0 0.7582
AT4G04980 unknown protein Lus10018473
[exp]
13.3 0.7580

Lus10042598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.