Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03140 433 / 7e-151 splicing factor Prp18 family protein (.1) AT1G54590 281 / 3e-92 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022049 [exp] 596 / 0 AT1G03140 541 / 0.0 splicing factor Prp18 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210600 [exp] 470 / 2e-165 AT1G03140 518 / 0.0 splicing factor Prp18 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02840 [flax] [poplar] Prp18 Prp18 domain PF08799 [flax] [poplar] PRP4 pre-mRNA processing factor 4 (PRP4) like
Representative CDS sequence Show only first row Show all	>Lus10042599 pacid=23182060 polypeptide=Lus10042599 locus=Lus10042599.g ID=Lus10042599.BGIv1.0 annot-version=v1.0 ATGGACGCCCTCAAACAAGAGCTCCTCAGGAAACGCCAAACTCTAGCCCAAGAAACCGGCGGGAGGCGCTTCTTCAAGCGCTCCGAGATCGAGAAGAAGG AAATCCAGAAGTTCCGCGAACTGGAGAAGCGCGAGCTCGAAGCTAAAGCCGCACGAAAATCCGCCAATACCGATTCAAAATCGGGAGAGCCTCCTAATTC CGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGTGGTCGCCAGCACGGTCGCGGCTTCCGCCTCCACCTCCACGGGGTCCAAATCCCTAACCAACGAA CAGAATATCGAGAACCTCGACCTACCTAGACAGGAAGTCATCCGCCGGCTCCGCTTCCTGAAACAGCCTATCACTCTCTTCGGTGAGGACGATGACTCCA GGTTGGATCGGTTGAAGTATGTGTTGAAAGCTGGGCTGTTCGAGGTCGATAGCGACATGACGGAAGGGCAGACGAATGATTTCTTGCGCGATATTGCCGA GCTGAGGAAGCGGCAGAAGAGCGGGATTCCGAGCGAGAGGAAGCGCAAGGATAGGGAAGGAGGGGTATGCGGCGAGGATGGGGAAGGAGGCAAAGGAGAA GGTGAGCTGAGTGGCGATGGTGGATCGAGCGGGCTGGAGACGGACAAGGATGTGAAGCGGATGAAAGCCAATTTCGATGATTTGTGCGATGAAGACAAGA TTTTGGTGTTCTTCAAAAGGCTGCTGAATGAGTGGCACCAGGAGTTGGATGAGATGCCGGATGCTGAGAAGCGTACTGCTAAAGGGAAGTCGATGGTCGC GACGTTTAAACAGTGTGCTAGGTACTTGAGTCCTTTGTTCAAGTTCTGCAGGAAGAAGGTTCTCGGGAACGATATCCGCCGAGCACTGATGATCATGGTG AACTTCTGCATGGAACGAGACTACCTTGCGGCCATGGATCACTACATCAAGCTGGCAATAGGAAATGCGCCATGGCCTATTGGTGTTACTATGGTTGTCG GTGAAGAGGCTTATGACCTTCTGCAGTCGGTGAAGAGGCTTATGCCCTTCTGCCAGCGGCGGTACCCTACCGCACCATCGAAGGCTGTGGAGTTCAACAG CTTGGCTAACGGCAGCGACTTGCACTCGTTGTTGGCAGAGGAGGCGCGATTGAACCCGCCTTCGGAGAGTCGATTGAGGCTAATGCCTACGCCTGCTGAC AATTAA
AA sequence Show only first row Show all	>Lus10042599 pacid=23182060 polypeptide=Lus10042599 locus=Lus10042599.g ID=Lus10042599.BGIv1.0 annot-version=v1.0 MDALKQELLRKRQTLAQETGGRRFFKRSEIEKKEIQKFRELEKRELEAKAARKSANTDSKSGEPPNSVPSSSSSSSSAVVASTVAASASTSTGSKSLTNE QNIENLDLPRQEVIRRLRFLKQPITLFGEDDDSRLDRLKYVLKAGLFEVDSDMTEGQTNDFLRDIAELRKRQKSGIPSERKRKDREGGVCGEDGEGGKGE GELSGDGGSSGLETDKDVKRMKANFDDLCDEDKILVFFKRLLNEWHQELDEMPDAEKRTAKGKSMVATFKQCARYLSPLFKFCRKKVLGNDIRRALMIMV NFCMERDYLAAMDHYIKLAIGNAPWPIGVTMVVGEEAYDLLQSVKRLMPFCQRRYPTAPSKAVEFNSLANGSDLHSLLAEEARLNPPSESRLRLMPTPAD N

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	0	1
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	1.0	0.9014
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	1.4	0.8944
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	1.7	0.8939
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	2.0	0.8899
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	3.5	0.8306
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	4.9	0.8657
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	5.7	0.8127
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	5.7	0.8353
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	6.3	0.8423
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10041766 [exp]	6.3	0.8685

Compare expression of checked genes

Lus10042599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.