Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04860 298 / 2e-100 Plant protein of unknown function (DUF868) (.1) AT5G28150 297 / 3e-100 Plant protein of unknown function (DUF868) (.1) AT2G04220 174 / 4e-52 Plant protein of unknown function (DUF868) (.1) AT4G12690 170 / 2e-50 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G48270 160 / 1e-46 Plant protein of unknown function (DUF868) (.1) AT3G13229 151 / 2e-43 Plant protein of unknown function (DUF868) (.1) AT2G27770 140 / 6e-39 Plant protein of unknown function (DUF868) (.1) AT5G11000 122 / 2e-31 Plant protein of unknown function (DUF868) (.1) AT2G25200 99 / 2e-23 Plant protein of unknown function (DUF868) (.1) AT2G36470 84 / 3e-18 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022050 [exp] 562 / 0 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 283 / 1e-94 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 283 / 2e-94 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 165 / 2e-48 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 161 / 7e-47 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10032896 [exp] 157 / 2e-45 AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1) Lus10027127 [exp] 150 / 6e-43 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 150 / 1e-42 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 149 / 3e-42 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210800 [exp] 363 / 5e-126 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 360 / 1e-124 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 332 / 7e-114 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 326 / 3e-111 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.001G467500 [exp] 166 / 5e-49 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 166 / 1e-48 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.005G068100 [exp] 166 / 1e-48 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 163 / 1e-47 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 163 / 1e-47 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.004G187600 [exp] 160 / 8e-47 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10042600 pacid=23182049 polypeptide=Lus10042600 locus=Lus10042600.g ID=Lus10042600.BGIv1.0 annot-version=v1.0 ATGCTACTGAGAGCAATTACAGACAGGAAGAAACTGAAGGAATTCCCATCATGCTTCGGAGAGAGCGGAGTCCAAGTAGCCGATTCCTCTTCCGCTTCTT CCCCATCCTCAGCAGCTTCTTCCAAATCCGCCCAACACCAAAACCTCGTCACCTGCGTTTACCACTGCAAATTGCGCCACCTCCTCCCATGTTTCATCAC GGTAACTTGGTCCAAAACACTCATGGGTCAAGGTCTAGGCATAGCAATCGAAAATTCCTTCCACCAGTGTCTCTGTAGAGTCGATATAAAGCCCTGGCTG TTCTCCAAGAGGAAAGGATTGAAAACCCTAGAAATCGACAATTCCGACAGAATCGACGTCTACTGGGATGTCTCCTCTGCTAAATTCGGCCCCAGGAGCC CCGAGCCGTTACAAGGGTTCTACTTAGCCGTTGGATTCAACCGTGAAATCATGTTGCTGATTGGTGATTTGAGGAAGGAGGCGTGTAAGAAATTCGAAAC GGATCCGGTGATTCTTCGGTCTAATTCGAGTAATAATGCTGTGTTTGTTGCGAAAAAGGAGCACATTTTTGGGAAGAAGTTGTATGGTGTTAAAGCTCAG TTCTTTGGGGATGGCCAATTGCATGATGTCGGGATTGAGTGTGATAGTGACAGTGCCACGGTTGATCATTGTCTTGTGATCAAGGTGGATGGTAAAGTAG TGATGCAGGTGAAGAGGTTGAAGTGGAAGTTTCGTGGGAATGGGACGATATCGGTGGATGGCTTGCCGGTTGAGGTGTTTTGGGATGTTCATGACTGGTT ATTTGGTGGTAGTGGTGCAATGGGGGGTAGTAATGCAGTGTTTATGTTTCAGACTTGTTTGTCTGCTGAGAAGCTGTGGAATAGCGGCCAGCAGCAGGTA TTCGATCTTTCTGCAGCATCCAGTGGTGGTGATGCTATGATGTCGCAGTCGCGGAGATTTAAGGAGTGCCAATCACAACAACAAGGTCTTGGTTTCTCGC TTGTTTTGTATGCTTGGAAGAAGAATGATTGA
AA sequence Show only first row Show all	>Lus10042600 pacid=23182049 polypeptide=Lus10042600 locus=Lus10042600.g ID=Lus10042600.BGIv1.0 annot-version=v1.0 MLLRAITDRKKLKEFPSCFGESGVQVADSSSASSPSSAASSKSAQHQNLVTCVYHCKLRHLLPCFITVTWSKTLMGQGLGIAIENSFHQCLCRVDIKPWL FSKRKGLKTLEIDNSDRIDVYWDVSSAKFGPRSPEPLQGFYLAVGFNREIMLLIGDLRKEACKKFETDPVILRSNSSNNAVFVAKKEHIFGKKLYGVKAQ FFGDGQLHDVGIECDSDSATVDHCLVIKVDGKVVMQVKRLKWKFRGNGTISVDGLPVEVFWDVHDWLFGGSGAMGGSNAVFMFQTCLSAEKLWNSGQQQV FDLSAASSGGDAMMSQSRRFKECQSQQQGLGFSLVLYAWKKND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	0	1
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	3.2	0.8334
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	4.7	0.8114
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	5.7	0.7981
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	6.9	0.7770
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10043373 [exp]	6.9	0.7694
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023143 [exp]	9.9	0.7493
AT4G20880			ethylene-responsive nuclear pr...		Lus10038459 [exp]	11.4	0.7534
AT1G70780			unknown protein		Lus10035084 [exp]	12.7	0.7415
AT1G56220			Dormancy/auxin associated fami...		Lus10015193 [exp]	18.2	0.7358
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	20.8	0.7529

Compare expression of checked genes

Lus10042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.