Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02720 259 / 5e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022052 [exp] 401 / 2e-134 AT4G02720 266 / 8e-84 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G051500 [exp] 317 / 7e-102 AT4G02720 254 / 2e-79 unknown protein Potri.005G210900 [exp] 303 / 6e-97 AT4G02720 254 / 2e-79 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06047 [flax] [poplar] Nkap_C NF-kappa-B-activating protein C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042601 pacid=23181999 polypeptide=Lus10042601 locus=Lus10042601.g ID=Lus10042601.BGIv1.0 annot-version=v1.0 ATGGGCAGACCCGCTTCAATCATCGAAGTTCCAGATCGAGGTTACCGTCCCGATCGCTACAACAACCGTCGCTCGCCGGATTCCGATGGCTCCCCCGTGT ATCGTCGTCGCAGCCCTTCATACCAAAGGTACGATGAGCGCCATCGTGAAACAGACCGAGGGCATCGCAGCCCTTCATACCAAAGGTACGATGAGCGTCA TCGAGGGCGACGCCACCGCCGCTCAACTTCACCAGATGGCCGAAGCCCTACCCCTAGGGGGTGGAGGAGTCCGAGAGGAAACCTAGATACTCTTCCTAGG AGCTTCGGCAGAGGTAGAGATCGGAACGGTAAAGACGTCGAATCTGAGTCCGATGAAGAACTCAGAGGATTGAGCTTTGAGGAGATGAGGAGGGTGAAGA GGCAGAAGCTGAGAAAGTCAATGAGCTATTGCATCTGGCAGGTTACCCCCAGCCCACCTAGGACCGGGAACGAGACAGAGGAAGAAACCGAAGATGTTCC GGAGGCCACGGACGATTTGTATGTGGAAGATGGAGGGAAAGGTAAATTGAAGATCGAGTCGGGTCATTCTGGAAGTAGTGATTCAGATAGTGCTTCTGAA TCTGATTCTGATTTCGACGATTCACGATCGAGAAGGAAGAAGAGAAGTTCAAGGTCGAAGCGCCGGAGTAAGGATTCGGATAGCTCATCCGGGAGTGAAA TGGAAGATTCAAAATTAAAGAAGAAGAAGAAGAATCGCAGTTCTAAGCATAGGAGTACAAAGTCACTAGGCAAAGAAACGGATGAGGATGTGAGTGACAG TGGAAGTGATTCCGAAGAGGATCGTCGTCGCCAGAAAAAGAGGTCATCCAAGAAGAACAAGAAGAGCCGCAGAAGTAGAAGAAGCAGGAAAAGGAAGAGC AGGTATTCTGATTCTGAGGATAGCAATAGCGATGATGATAGAGATGCGAGCGGTGATGACCTTGAGAAGTCCAAGACCAAGAAAGAGAAACGAAGATCAA ATTCTCGAGCAAAAGTGTCGAAGAAGAAGAGGAAATCGGAAACCGAGAGCGAGGGTGGTGCAGATTCTGATGTGAATTTGGATCCTAAAAGCGATGCCAA GAGCGAAGAACCAATAGCAGTAGATGAAGAAGCTATGATAGCTGAAAGGAATGCTGAAACTCTGAAGTTCAAAGAGATGATCGAGGCACAGAAGAAGCCG CCTGCTTTAGATAATGAACCTGCCGTTGGTCCGATGCCTTTGCCCCGAGCTGAGGGACACATTAGTTACGGTGGAGCTTTGAGGCCCGGTGAAGGTGACG CCATTGCTCAGTATGTGCAGCAAGGGAAGCGTATCCCTAGAAGAGGAGAAGTGGGTCTTTCTGCTGACGAGATTCAAAAGTTCGAGACACTTGGATATGT GATGAGTGGTAGCAGGCATCAGAGGATGAATGCAATCCGTATTAGGAAAGAAAACCAGGTTTACAGTGCTGAGGATAAGCGTGCTTTGGCCATGTTTAAC TATGAAGAGAAGGCGAAACGTGAACACAAGGTTATGGCTGACTTGCAGCGTTTGGTCCAACGACATATTGGGCAGGATGTCGGTCCTTCGCATGATCCTT TTGGAACAACAAAAGAAACTGATGTTGCTGATGCTTGA
AA sequence Show only first row Show all	>Lus10042601 pacid=23181999 polypeptide=Lus10042601 locus=Lus10042601.g ID=Lus10042601.BGIv1.0 annot-version=v1.0 MGRPASIIEVPDRGYRPDRYNNRRSPDSDGSPVYRRRSPSYQRYDERHRETDRGHRSPSYQRYDERHRGRRHRRSTSPDGRSPTPRGWRSPRGNLDTLPR SFGRGRDRNGKDVESESDEELRGLSFEEMRRVKRQKLRKSMSYCIWQVTPSPPRTGNETEEETEDVPEATDDLYVEDGGKGKLKIESGHSGSSDSDSASE SDSDFDDSRSRRKKRSSRSKRRSKDSDSSSGSEMEDSKLKKKKKNRSSKHRSTKSLGKETDEDVSDSGSDSEEDRRRQKKRSSKKNKKSRRSRRSRKRKS RYSDSEDSNSDDDRDASGDDLEKSKTKKEKRRSNSRAKVSKKKRKSETESEGGADSDVNLDPKSDAKSEEPIAVDEEAMIAERNAETLKFKEMIEAQKKP PALDNEPAVGPMPLPRAEGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVGLSADEIQKFETLGYVMSGSRHQRMNAIRIRKENQVYSAEDKRALAMFN YEEKAKREHKVMADLQRLVQRHIGQDVGPSHDPFGTTKETDVADA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02720			unknown protein		Lus10042601 [exp]	0	1
AT4G02720			unknown protein		Lus10022052 [exp]	1.0	0.9082
AT3G18310			unknown protein		Lus10023992 [exp]	2.0	0.8906
AT1G48040			Protein phosphatase 2C family ...		Lus10017106 [exp]	2.6	0.8626
AT1G23780			F-box family protein (.1)		Lus10033762 [exp]	2.8	0.8777
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	3.0	0.8856
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	4.5	0.8432
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	5.5	0.8644
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	6.3	0.8767
AT3G46450			SEC14 cytosolic factor family ...		Lus10004953 [exp]	6.9	0.8108
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	11.6	0.8286

Compare expression of checked genes

Lus10042601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.