Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36740 489 / 1e-148 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 454 / 3e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G05380 433 / 4e-129 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT4G14920 381 / 6e-111 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT3G14980 273 / 9e-75 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 193 / 1e-49 PHD finger transcription factor, putative (.1) AT5G63900 112 / 5e-25 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 107 / 4e-23 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 107 / 6e-23 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 96 / 2e-19 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022053 [exp] 2840 / 0 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022055 [exp] 907 / 0 AT5G36740 154 / 7e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10006110 [exp] 439 / 7e-129 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 435 / 6e-128 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10015266 [exp] 198 / 1e-50 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 190 / 4e-48 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10018681 [exp] 172 / 2e-43 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 166 / 3e-42 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 164 / 5e-41 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G051400 [exp] 706 / 0 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 692 / 0 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 521 / 3e-158 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 449 / 2e-132 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 276 / 1e-79 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.001G392801 [exp] 286 / 4e-78 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.009G072600 [exp] 219 / 1e-57 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 196 / 8e-51 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.006G120200 [exp] 93 / 1e-18 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 91 / 7e-18 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042602 pacid=23181883 polypeptide=Lus10042602 locus=Lus10042602.g ID=Lus10042602.BGIv1.0 annot-version=v1.0 ATGTCAGTGATGAGACTTAGATCTAGGGGCAAATCCTTGGGGACAGTCAATGAAGGTGAAGGGACGGGAAGGATAACAAGGGCCAAAGCCGCCGTTCAAG AAGGCGGAGGTAATGGTACATATTGTAAAGTGATGATTTTTGATGAAGACGGAGATGGATTATCGTCCAGTGAGGATGTGGCGCCGGGAATAAACGAGAG CGATGAGGAATGTGTTGGGAAAAGTGTCTTTGGGAGGAAAAGGGGTAGGGTAGATAGTGAAGTCGAGGGTGAAAGTGTCACTGACAGAAAGAAGAAAGTG AAGGATAGTGGTTCGGTCGATCAAGGAGAAGTAGCTTGTAGAGTTCTTTCATTGAGTGCTTCCGCAGAAGCCGAGTGTTGTAAGCATTCTGGGGCGAGAT CGATTGTTCTTGGGCTTGGAATGTTTGGAGCTGGTGGGTCACGAACCAGAACATTTGACGCGAACAAAGAGTTTCATGGGACTCCTGATGGTAAATTAAT GGATACAACTAAGGATAAGGATGACAGAGAATTGAGAAGTAGAGGTAAGGCTAAGTTCAAGGAGGAATGTGTGGGAGAAATGAGCACTGATTCAGCTAAA GATAATGGTTGTAAATTGATTGATTCTGGCAGAGGGGAAGATGGTTCATGTGGTGGTCAGAACAATGTGCTAGAAGGAGAGGGTAGAGATGCTCAAAACG ACGAGGAATCCAGCGAGCTGGGTGGTGTAGCAATGAGTAGGAAAATCAACGAGACAGAAAGTGGAGGTGGTGTTATTCATACGAAAAACACAAATGAAAA GGATTTGGATGGTCATGTGACAGTTACCCATAGGGTTCTACTGTCCACCAGTTCGGAAAAAAGCGAGCCTGAGAAGGATCTTGCTGGTGAGAAGAGTAAG GTTGTAGTAGTTGGCACTGGGACCAACATAGCACACGTGTCTGAAATGATAAATTCTGAGGTCAAGGAGCACGATGTGTTAAGGAAAGAACTGGATCACC CTTCTGATTGTAAATCATTAGAGGAAGCAAAAGAAGATGGGCAGGAAAGCCGAATAACAGCTAAATGTGGTGAGGAACAAACAGGAAAAGATCTTACAGA TTTTAATGGGGACAAGGACTGTCAGTTGACAAATATTGGCAAAGAAGATGAGGGTCTATTTGCTGATCAAAATATTGTTCTGGAAGGGCATGAGAGAACT GAGATGAAAAATAACAATTCTAATGAGCATAACCATAACATTATTCACGAAGCTGATGATGGAAGGGAAGAGTGTGAGAAAGATGGTGTGAAGAAAGGTG GACCTGCTCTTGTACGAAAGATGAAGGCCCGGGGAAAAGATTTAGATGGTCAGATGCATATAGTTCGCAGAGTTCTGCGGTCAAACACCTTGCCACAAGC AGAATGCGATAAAGATGTGATTTCCTTAGGGGTTGAAACTGGGACAGATGAATGTAATGAATCTGACTCCGAGGTTAAAAAAAAGCGTCAAGAGCTGCTT GATGTTGAGTGCACTGGTCCTCTGGTTGATGAGGAGAAACAGTTAAAACGTAAGCGTGGAAGACCACCCAAGAGTAGTCCTAAGGGAGAAACTGATATAC CCCGTAAGCGCGGTAGACCACCCAAGGGTTGGCTTAAGGATGAAACTGATTCACCCCGTAAGCGTGGAAGACCCTTTAAAGTTTCCAGGTCGAACAATTT TAACAAGATTAGACTGAAATATCAAGAGAGGGTAGAAACTGGCAAATCACGGGGCAGACCCAAGAAGCTTTGTTTGATTGATGATGACTGCAGTGATGTA GCGGTTAAAGAAGTCGAAAAGGACAAAAATAATGAGAGCCGTAAAAGGGGCCCGGGTAGGCCACCAAAGGTGAAACCCTGGAAGAAAAAACATATGCATG CAAGGCCCCGTGAGAAGCTTCAGAATACATTGTTGGAGAGAATGAGCAAAATTGATGAGGGTGATGCTCATGTTGGAAAAGGACTTGGCGTCAACATATC TGAGGTGCAAAAAACTTCCAAATCTAAGGAGGTCGATGAGGAGCTGGAACAAGAGAAAGTCAAACCAACGGCTGGAGACAGTGGAGCAAGGAAGTTAGAA AAGCAGTTGGTGAGGGATAAAATCGTGGACATGCTGTTGAGTGCTGGTTGGACAATTGATTATAGGCCCAGGAATGGAAGAGTTTATAATGATGCAGTGT ATGTTAATCCTGAAGGAAGAACTCATTGGTCGGTGACCAAGGCTTACAGGATGCTTAAAGATCATTATGATAACGGTGGTGGTCATTCTGCATCTTGCAA ACCTGGATTCAAGTTTTCTCCACTTTCTGATGAAGAAATAGAGGTTCTGCGTCGAGTAGTTGGTAAAGTGAGGTGCGATAAAAATAAAAAGAAAAAGGAT TGGAGGCGGGAAAAGCAGGGTTTGAAGAAAGGTGGAGCTCTAACAAAGCCAAAAGGGAAAGAAAAACTCAATAAAGGAGGTAAGATGACAAAGTCAAAAA ATAGCTCAAAACGTTTGTCATCATCAGACCAAATGACAGCAGTTAAGGGGAATAAACATCGTAATGATACAAAGCGATATGGGTTGATGGTTCGTAACAC CACAGAGCTTTCAGACCGTGATGGTGGCAGTTATCTGCTATATAATGCGAAACGTACTGTACTTTCCTGGATGATAGATTTGGGCTGCCTGCTACTGGAT GCCAAGGTGGAGTACATAGAAGGTCGAAAAATGCAGACAGCTTTTACAGGGACAATTGTATCAGAGGGAATTCAGTGTGATTGCTGCAGTAGAACTTTTA CTGTTCCTCTATTTGTTAACCATGCTGGTTGCAAAACCCGTGGCTCGTACAATATCACATATTTAGATGATGGACGTTCACTCTTGCAGTGCCAGCTAGA TTCATGGCTTAAACAAAAAGAGCCCGATCTTAAAGGTTTCCATTTTGTTGATACTAATGGTGACGATCCAAATGATGACACCTGTGGGATCTGTGGAGAT GGGGGAGACCTGATTTGTTGTGATGGCTGCCCATCAACCTTCCATCAGAGCTGTCTGGGGTTTGAGAATTTTCCTTCAGGGTTCTGGAACTGTATATACT GTTGCTGCAAATTTTGTGGCGAAGGGGGTGAGAAAGATCCTACAGCCGTGCAGCCATTACTTCAATGTAGCCTGTGCGAGGAATCATATCATGTATCTTG TGTCCAGGAAAATGATTCTCAAGATGATGACCCAATGTTTCAATCATTTTGTGGGAAGAATTGCCAAGAGCTGTATCAGAGGCTACAGTTGCTTCTAGGG GTAAAGCATGAACTTGAAGATGGGTTTTCATGGACCCTCGTTCGGCGGTTTGATGTTGGGACTGATATTTCTCTTAGTGGGATGCCACAAAAGGTTGAAT GCAACTCCAAGACGGCTGTTGCTTTGCAGATAATGGATGAGTGTTTCCTACCCATGGCTGACCATAGAAGTGGGGTTAATTTGATTCGTAATGTTGTTTA TAACTTCGGGTCAAACTTCACCAGACTGAATTACAGCGGTTTTCTAACTATGGTCTTGGAGAGAGAGGATGAAATGATATCTGCTGCATCCATTCGGATC CACGGGAATCATTTAGCAGAGATGCCTTTCATAGGTACCCGTCATATGTATAGGCGGCAAGGAATGTGTCGGCGCCTTTTAAGTGCAATTGATAGTGCTC TTTCCTCGCTAAACGTTGAGAGATTGGTAATACCTGCAATATCTGAGTTAAAGGAAACATGGACCTCTGTCTTCGGTTTCGCACCTCTTGAGAGATTAAG CAGCCCAAAAATCAGAAACATGAACATGCTTGTATTTCCTAGAGTTGACATGTTACAGAAACCAGTGTTGAGTCAACAGCCTGATGGATGCAACATGGCT ACTGCCGAAGGTTCAAAATTGAATGATTCTGATGACAGATGTCCAGCTGGATTTGATTTAAACAGCACTTATGAGCCTACTGAATCTTGCTCGCTTCCTG ATGGCTGCTTGAATCATACTTCTGACTTGCCACATAATCTTAGTGATGGAGAGCCCCTTGATGAAATCTGTGAGATTCCTGGTAATGTGGAGAAAAACGG CGCGAATATACATAATCCTATCTCTGTTGGTGATGCCAGGGAACAAAGTGGAGAGTTTTCTGAACCTATGGCTGCCATTACTGATGAGAGAAAATTGGAA TCAGGTTCTGAATCATTGATTTCCCATGTTGGTTCGGAATCTGGTGATTGTAGGAGACAATCCCTTCCCGATGATACAGCAGCTTCTTCGGAAGTTAACC TGGAAGAGAAAATGGTTCCTGGTAAAGCACCTCCTTTGGAAGTGAATCCGGACGGGAAAATGGTTGATCTAAACCTGGCTTCACATGAGGGCTCTGTCGA TGATATGCAAGTCATGGATGATGAACACACTGGTCTGCCTTTGAAGTCCGAGCCGTCAAGTACTGATGATATCCATCAGGGATCCGAAACCAAGATCTTG CCTGATGAAATACTACAGTCACACGAAAATGATGAAAGTAATAGCCGTTGTGGCATCCCTGATGATCATCAAGATGATTCCTGTCAGCAGAAGAACTTGA ACGAGGCACATGGGAGGGAAGTTGGATCAACCCCTCTAATAACCAACGAGCCTTCTCATTCGAAAATCCCCGAGTCGAGTGACATCTCTGTTGCAGCTGA AAGAGATGCCCCTTCTCTGATGAAGCAGCATCGGCCGAATACCGAGGATGTGCAGCCCGTGAGTCCAGCTGCAGAGGTGGATATTGACAGACTGACGCAG CATGGGGAGGAAGCTGAATCAACCCCTCTAATAACCAACGAGCCTTCTCATGCTGGTGCTCCAGATACCGGTATGGAACCTCAATGTCAAACGCACGAGC ACGAAAGAGATGCCCCTTCTCTGATGAAGCAGCCTCAGCCGAATACTGGGGATATGCAGCCGGTGGATATTGATAGAATGACTCAGCGTAGTTTGGAACC GATGTGTTCTTCTACGAGGTCCGGCCCTGGTGTCGGAGTTCATTTGCCTGATTTGGGGGCATCAGTTCCTACAATACCCCAAAGGTGA
AA sequence Show only first row Show all	>Lus10042602 pacid=23181883 polypeptide=Lus10042602 locus=Lus10042602.g ID=Lus10042602.BGIv1.0 annot-version=v1.0 MSVMRLRSRGKSLGTVNEGEGTGRITRAKAAVQEGGGNGTYCKVMIFDEDGDGLSSSEDVAPGINESDEECVGKSVFGRKRGRVDSEVEGESVTDRKKKV KDSGSVDQGEVACRVLSLSASAEAECCKHSGARSIVLGLGMFGAGGSRTRTFDANKEFHGTPDGKLMDTTKDKDDRELRSRGKAKFKEECVGEMSTDSAK DNGCKLIDSGRGEDGSCGGQNNVLEGEGRDAQNDEESSELGGVAMSRKINETESGGGVIHTKNTNEKDLDGHVTVTHRVLLSTSSEKSEPEKDLAGEKSK VVVVGTGTNIAHVSEMINSEVKEHDVLRKELDHPSDCKSLEEAKEDGQESRITAKCGEEQTGKDLTDFNGDKDCQLTNIGKEDEGLFADQNIVLEGHERT EMKNNNSNEHNHNIIHEADDGREECEKDGVKKGGPALVRKMKARGKDLDGQMHIVRRVLRSNTLPQAECDKDVISLGVETGTDECNESDSEVKKKRQELL DVECTGPLVDEEKQLKRKRGRPPKSSPKGETDIPRKRGRPPKGWLKDETDSPRKRGRPFKVSRSNNFNKIRLKYQERVETGKSRGRPKKLCLIDDDCSDV AVKEVEKDKNNESRKRGPGRPPKVKPWKKKHMHARPREKLQNTLLERMSKIDEGDAHVGKGLGVNISEVQKTSKSKEVDEELEQEKVKPTAGDSGARKLE KQLVRDKIVDMLLSAGWTIDYRPRNGRVYNDAVYVNPEGRTHWSVTKAYRMLKDHYDNGGGHSASCKPGFKFSPLSDEEIEVLRRVVGKVRCDKNKKKKD WRREKQGLKKGGALTKPKGKEKLNKGGKMTKSKNSSKRLSSSDQMTAVKGNKHRNDTKRYGLMVRNTTELSDRDGGSYLLYNAKRTVLSWMIDLGCLLLD AKVEYIEGRKMQTAFTGTIVSEGIQCDCCSRTFTVPLFVNHAGCKTRGSYNITYLDDGRSLLQCQLDSWLKQKEPDLKGFHFVDTNGDDPNDDTCGICGD GGDLICCDGCPSTFHQSCLGFENFPSGFWNCIYCCCKFCGEGGEKDPTAVQPLLQCSLCEESYHVSCVQENDSQDDDPMFQSFCGKNCQELYQRLQLLLG VKHELEDGFSWTLVRRFDVGTDISLSGMPQKVECNSKTAVALQIMDECFLPMADHRSGVNLIRNVVYNFGSNFTRLNYSGFLTMVLEREDEMISAASIRI HGNHLAEMPFIGTRHMYRRQGMCRRLLSAIDSALSSLNVERLVIPAISELKETWTSVFGFAPLERLSSPKIRNMNMLVFPRVDMLQKPVLSQQPDGCNMA TAEGSKLNDSDDRCPAGFDLNSTYEPTESCSLPDGCLNHTSDLPHNLSDGEPLDEICEIPGNVEKNGANIHNPISVGDAREQSGEFSEPMAAITDERKLE SGSESLISHVGSESGDCRRQSLPDDTAASSEVNLEEKMVPGKAPPLEVNPDGKMVDLNLASHEGSVDDMQVMDDEHTGLPLKSEPSSTDDIHQGSETKIL PDEILQSHENDESNSRCGIPDDHQDDSCQQKNLNEAHGREVGSTPLITNEPSHSKIPESSDISVAAERDAPSLMKQHRPNTEDVQPVSPAAEVDIDRLTQ HGEEAESTPLITNEPSHAGAPDTGMEPQCQTHEHERDAPSLMKQPQPNTGDMQPVDIDRMTQRSLEPMCSSTRSGPGVGVHLPDLGASVPTIPQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10042602 [exp]	0	1
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	1.0	0.9404
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	6.3	0.9224
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	9.1	0.9352
AT1G16630			unknown protein		Lus10006845 [exp]	11.6	0.9311
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	11.8	0.9237
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	13.4	0.8977
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	14.1	0.9296
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	14.3	0.9162
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10011306 [exp]	16.2	0.9182
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	16.4	0.9263

Compare expression of checked genes

Lus10042602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.