Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22490 159 / 2e-47 Seed maturation protein (.1) AT3G22500 145 / 2e-42 ATECP31 LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31, Seed maturation protein (.1) AT1G03120 91 / 3e-22 ATRAB28 responsive to abscisic acid 28 (.1) AT5G27980 83 / 4e-19 Seed maturation protein (.1) AT5G53260 70 / 2e-14 Seed maturation protein (.1) AT5G53270 64 / 2e-12 Seed maturation protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022058 [exp] 179 / 3e-57 AT3G22490 98 / 6e-26 Seed maturation protein (.1) Lus10010553 [exp] 156 / 2e-46 AT3G22490 302 / 1e-103 Seed maturation protein (.1) Lus10006121 [exp] 152 / 6e-45 AT3G22490 311 / 1e-107 Seed maturation protein (.1) Lus10019001 [exp] 125 / 2e-34 AT3G22490 262 / 3e-88 Seed maturation protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048000 [exp] 137 / 5e-39 AT3G22490 229 / 4e-75 Seed maturation protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04927 [flax] [poplar] SMP Seed maturation protein
Representative CDS sequence Show only first row Show all	>Lus10042604 pacid=23182035 polypeptide=Lus10042604 locus=Lus10042604.g ID=Lus10042604.BGIv1.0 annot-version=v1.0 ATGAGCCAACAACAGCCAAGCAGGCCGCAAGCCATGGACACCGATCGCGACCAAGCTACCGCCATCAAATACGGCGACGTTTTCACCGTCCAGGGAGATC TCGCCAGTAAACCTGTGGCCCCTGGTGACGCTGCCGCCTTGCAAGCCGCGGAAGCCCGAGCTCTTGGCCGGACACTGGCGAGTGGTCCCGGTGCGGTCAT GGGATCTGCTGCCACCGTCAATTACCACGCTGGTGCTGTTGACCGTAAGCAAACGACCGACTCGGTTAGAGACCAAGGAGTCTCCGTCTCTGCCGCCGAT GTTTCCGGTGCTCGCGTCGTTACCGAAACCGTTGCTGGCCAGGTGGTGGCACAGTATGTAGACCCTACAGCTGGGGCAGAGGAGGATGGGAGGGGAGGAG GAGGTGACGGAATAACGGTGGGGGAGGCGCTGGAGGCGGCGGCACTGTCGGTGGGGGAGAAGCCGGTGGATCAAGCGGATGCGGCTGCAATACAGGCGGC GGAGGCGAGGGCGATTCAGAGCAACAGGATTCCACCAGGTGGAATCGCAGCAATGGCGCAGTCGGCTGCGAAGCAGAACGCTAGAACAATGGGCGACGAG AACAAAACCACCGTCGGGGATATCCTCTCGGATGCGGCGACGAAGCTGACGGGGGACAAGGAGGTGACGAGGGAAGACGCGCAGGGAGTTATCGAGGCGG AGATCAGGAACAAGCCTGACATGCGTACTACTCCCGGTGGAGTTGCGGCCGCCATGGCGGCTGCAGCCAGGGTTAATCGTGATGGCATGTAG
AA sequence Show only first row Show all	>Lus10042604 pacid=23182035 polypeptide=Lus10042604 locus=Lus10042604.g ID=Lus10042604.BGIv1.0 annot-version=v1.0 MSQQQPSRPQAMDTDRDQATAIKYGDVFTVQGDLASKPVAPGDAAALQAAEARALGRTLASGPGAVMGSAATVNYHAGAVDRKQTTDSVRDQGVSVSAAD VSGARVVTETVAGQVVAQYVDPTAGAEEDGRGGGGDGITVGEALEAAALSVGEKPVDQADAAAIQAAEARAIQSNRIPPGGIAAMAQSAAKQNARTMGDE NKTTVGDILSDAATKLTGDKEVTREDAQGVIEAEIRNKPDMRTTPGGVAAAMAAAARVNRDGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22490			Seed maturation protein (.1)		Lus10042604 [exp]	0	1
AT1G27300			unknown protein		Lus10015771 [exp]	4.2	0.8508
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10024583 [exp]	6.0	0.8833
AT3G48660			Protein of unknown function (D...		Lus10037036 [exp]	6.9	0.8504
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	7.3	0.8570
AT3G14280			unknown protein		Lus10037453 [exp]	10.4	0.8329
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	12.8	0.8504
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10018400 [exp]	13.0	0.7652
AT1G07040			unknown protein		Lus10030795 [exp]	21.5	0.8411
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	26.7	0.8028
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Lus10012962 [exp]	27.2	0.7924

Compare expression of checked genes

Lus10042604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.