Plant FIBer expression Database

Lus10042605 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02715 65 / 1e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022059
[exp]
222 / 1e-73 AT4G02715 151 / 4e-46 unknown protein
Lus10014679
[exp]
114 / 2e-31 AT4G02715 115 / 1e-31 unknown protein
Lus10006911
[exp]
111 / 3e-30 AT4G02715 122 / 6e-35 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G211400
[exp]
105 / 4e-28 AT4G02715 105 / 4e-28 unknown protein
Potri.002G050900
[exp]
72 / 2e-15 AT4G02715 96 / 1e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10042605 pacid=23181964 polypeptide=Lus10042605 locus=Lus10042605.g ID=Lus10042605.BGIv1.0 annot-version=v1.0
ATGGAGACGCTTGTTGTAGCTGAACACAAGAATCAGTGCTATGGAAGAGTCAAGCCCCATGGCTCTGGCCGGTTTGGATCTTCCCCATCTAGACAATTTA
GAGCTATTAACTGCCGCACTTTCCAATCAGGACCTGGAATACTCCCTAATCCCTTCAGCCCTACCTCCAAAACCAACGCCAAAACCAAAACCAAAACCAA
AACCAAAACCAAAACCAAAATCAATCATTCCGTTCCATGTTCATCAGACTCACCATCTTCTCCTCCCAAAACGCCTTCCCATTTTAGCAAACCTGCTCCT
ATCAGCTCCCCCATCCCTATCAGCAGGAAGGAGCCTAGAAAATTATGTGTTTTCAGTGATAACTTGTTGATCCCAAGTGATGACGCTTGTTTCTCCGAGC
TATGGGCTGGTCCTGCCTATTCAAATTCACCACCTCCCAGTTCGTTGCCGATTCCTAAGTTCTCGATGAAGCCAAAACGAACTATGTCATTGGAGTTACC
ACTTCCTGATTCAGACTTTGAGCTCCCACCAATTGCCAAGTCTGCTCCGGCTTCCCCTTCTAGGGAACATGACTCACCCATGAAAGACCTATTCTGTGCT
GCTGATGATGCGACCAAGATTCTTCGTCGCATTCTCAACCTTGATTTGGATAATTGA
AA sequence
>Lus10042605 pacid=23181964 polypeptide=Lus10042605 locus=Lus10042605.g ID=Lus10042605.BGIv1.0 annot-version=v1.0
METLVVAEHKNQCYGRVKPHGSGRFGSSPSRQFRAINCRTFQSGPGILPNPFSPTSKTNAKTKTKTKTKTKTKINHSVPCSSDSPSSPPKTPSHFSKPAP
ISSPIPISRKEPRKLCVFSDNLLIPSDDACFSELWAGPAYSNSPPPSSLPIPKFSMKPKRTMSLELPLPDSDFELPPIAKSAPASPSREHDSPMKDLFCA
ADDATKILRRILNLDLDN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02715 unknown protein Lus10042605
[exp]
0 1
AT5G44790 HMA7, RAN1 copper-exporting ATPase / resp... Lus10036225
[exp]
10.2 0.8091
AT4G01580 B3 AP2/B3-like transcriptional fa... Lus10000750
[exp]
10.4 0.8226
AT4G18640 MRH1 morphogenesis of root hair 1, ... Lus10031290
[exp]
14.1 0.8400
AT5G44790 HMA7, RAN1 copper-exporting ATPase / resp... Lus10038364
[exp]
17.0 0.8354
AT2G22660 Protein of unknown function (d... Lus10004273
[exp]
20.1 0.8377
AT3G49490 unknown protein Lus10032925
[exp]
22.6 0.7640
Lus10003428
[exp]
24.4 0.8120
AT1G43650 nodulin MtN21 /EamA-like trans... Lus10028586
[exp]
31.3 0.6906
Lus10040057
[exp]
39.7 0.7182
AT1G29400 AML5 MEI2-like protein 5 (.1.2) Lus10007346
[exp]
44.9 0.7428

Lus10042605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.