Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63220 296 / 4e-100 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G67480 75 / 3e-15 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 73 / 1e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 71 / 8e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 67 / 2e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G03030 64 / 3e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G02980 61 / 1e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 61 / 2e-10 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT3G43710 59 / 6e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 59 / 9e-10 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022061 [exp] 367 / 9e-128 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10001071 [exp] 79 / 3e-16 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 77 / 7e-16 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 76 / 2e-15 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 76 / 2e-15 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 76 / 3e-15 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 74 / 1e-14 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 67 / 2e-12 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 61 / 2e-10 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050600 [exp] 330 / 2e-113 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 320 / 2e-109 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 86 / 7e-19 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G170000 [exp] 77 / 1e-15 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 73 / 2e-14 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 73 / 2e-14 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 73 / 3e-14 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 72 / 3e-14 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 71 / 7e-14 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G008000 [exp] 71 / 7e-14 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10042607 pacid=23181818 polypeptide=Lus10042607 locus=Lus10042607.g ID=Lus10042607.BGIv1.0 annot-version=v1.0 ATGTCTGAATTGATCGAAGGACTCCCGGACTCTGTAGCCATAAGGTGCCTCGCACGGGTTCCCTTTTACCAATTCCCCAAGTTAGAAGCCGTCTCCCGAT CATGGCAAGCCGCCATTCGCGGCTCTGAGCTCTATAAAGCCCGCCAAGAGGTTGGCTCGACCGAAGAGCTTCTATGTGTGTGCGCTTTTGATCCCGAAAA CATATGGCAGCTGTACGATCCATTACGAGAGCTCTGGATCACTCTCCCTATTCTTCCATCAAAGGTAAGGAATTTGGCTCAATTTGGCGCCGTCTCAGTG AGTGGAAAGCTCTATGTACTTGGTGGCAATAGTGATGCCGTTGACTTATTGACCGGGGATCAAGATGGAAGCTTTGCAACCAATGAAGTCTGGTCATATG ACCCGGTACTACGAACATGGGCTCGGCGCGCATCGATGCTTAGAGGGTTGTCGACTGTGCAAGTTTTGGACAGCGTGGCGTCCGGGTGGACGGTGGAGGA TTTCGGATGGCTCCAAGGCCCGATGGCAGTTGTCGAGAGCGATCTTTATGTAATGAGCCATGGGCTGATAGTGAAGCAAGAAAGGGCAGTGAAGAAGGTA GTGGTCTCAGCATCGGAGTTCCGGAAAAGGATCGGAGTGGGGATGACGGAGCTTCGGGGTGAGATATATGTGTTGGGAGGGTTGATTGGTCCTGATCAGT GGAATTGGGGTGTGCAGCCGTTGTCAGATGTTGATGTGTTGACCGTTGGTGGGGAGAGACCTACGTGGCATAGAGCAGCTCCGATGACAAGGTGCCGTGG AACCATATTAGGATGTACACAGCTGAGAATTTAG
AA sequence Show only first row Show all	>Lus10042607 pacid=23181818 polypeptide=Lus10042607 locus=Lus10042607.g ID=Lus10042607.BGIv1.0 annot-version=v1.0 MSELIEGLPDSVAIRCLARVPFYQFPKLEAVSRSWQAAIRGSELYKARQEVGSTEELLCVCAFDPENIWQLYDPLRELWITLPILPSKVRNLAQFGAVSV SGKLYVLGGNSDAVDLLTGDQDGSFATNEVWSYDPVLRTWARRASMLRGLSTVQVLDSVASGWTVEDFGWLQGPMAVVESDLYVMSHGLIVKQERAVKKV VVSASEFRKRIGVGMTELRGEIYVLGGLIGPDQWNWGVQPLSDVDVLTVGGERPTWHRAAPMTRCRGTILGCTQLRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	0	1
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	1.7	0.8985
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	3.2	0.8869
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	3.9	0.8815
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10033625 [exp]	4.5	0.8609
AT3G27250			unknown protein		Lus10032077 [exp]	4.9	0.8801
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	5.0	0.8728
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	6.5	0.8671
AT3G52105			unknown protein		Lus10011321 [exp]	6.6	0.8606
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	6.7	0.8635
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	8.1	0.8727

Compare expression of checked genes

Lus10042607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.