Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05620 521 / 0 NSH2, URH2 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) AT2G36310 325 / 6e-111 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) AT5G18860 52 / 5e-07 NSH3 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18870 49 / 2e-06 NSH5 nucleoside hydrolase 5, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18890 47 / 1e-05 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022062 [exp] 617 / 0 AT1G05620 506 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10003251 [exp] 348 / 8e-120 AT2G36310 540 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10035601 [exp] 343 / 2e-109 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10041249 [exp] 55 / 5e-08 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10033998 [exp] 50 / 2e-06 AT5G18860 899 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10012778 [exp] 47 / 2e-05 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144600 [exp] 563 / 0 AT1G05620 524 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Potri.006G083400 [exp] 327 / 2e-111 AT2G36310 534 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Potri.008G197500 [exp] 60 / 1e-09 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197400 [exp] 55 / 4e-08 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01156 [flax] [poplar] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Lus10042608 pacid=23181910 polypeptide=Lus10042608 locus=Lus10042608.g ID=Lus10042608.BGIv1.0 annot-version=v1.0 ATGGCGCCCAAGAAGATCATCATCGATACCGATCCTGGCATCGATGACGCGATGGCAATATTTCTTGCATTACGGTCACCGGAAGTTGAGGTGATCGGGT TGACGACTATATTCGGGAACGTTTACACTGCTCTAGCAACCATGAACGCTTTGCATTTGTTAGAGGTTGCAGGAAGGACTGATATTCCAGTGGCCGAGGG TTCTCATGTTACTATAACTAAAGGTACAAAGCTTCGGATTGCGGATTTTGTCCACGGGACGGATGGACTAGGAAACCAGAAGTTCCCGCCACCTAATGGG AAGGCTATTGAGAAATCTGCAGCTGATTTTCTTGTAGAGCAAGCAAATCTACACCCTGGCGAAGTCACTGTGGTTGCATTAGGTCCCCTAACAAATATTG CACTGGCTATTGAGTCAGATCCTGCGTTTGTGAAAAACGTTGGTCAGATTGTTCTCCTTGGTGGTGCATTTGCTGTCAATGGCAATGTGAATCCCGCAGC AGAGGCAAATATCTTTGGTGACCCAGAGGCTGCTGATATTGTTTTCACTAGTGGGGCAGATGTTGTGGCTGTGGGCATAAATGTAACTCATCAAGTTGTT CTCACAGACAGCGATCGAGAGAAATTAGCTAAATCAAATGGAAAATTTGCTCAGTATTTGTGCAAAATCCTCGGCATCTACTTTTCTTATCATCATGAGG CGTATTGCACTAGAGGGGTTTATCTTCATGATCCAGCTGTAGTGCTCGCTGCTGTGGATCCTTCACTTATGACATACACAGAGGGTGTCGTCAGAGTCCA GACCTGCGGCATAACGAGGGGGCTAACGGTACTCTATAATAAGCAGAAGAGGTTTGAAGAGGTTACTGAGTGGTCTGACAAACCCACAGTGAAGGTGGCA GTAACTGTTGATGCCCCTGCTGTTGTCAAATTGGTAATGGAGCGGTTGATGGAATCCTGA
AA sequence Show only first row Show all	>Lus10042608 pacid=23181910 polypeptide=Lus10042608 locus=Lus10042608.g ID=Lus10042608.BGIv1.0 annot-version=v1.0 MAPKKIIIDTDPGIDDAMAIFLALRSPEVEVIGLTTIFGNVYTALATMNALHLLEVAGRTDIPVAEGSHVTITKGTKLRIADFVHGTDGLGNQKFPPPNG KAIEKSAADFLVEQANLHPGEVTVVALGPLTNIALAIESDPAFVKNVGQIVLLGGAFAVNGNVNPAAEANIFGDPEAADIVFTSGADVVAVGINVTHQVV LTDSDREKLAKSNGKFAQYLCKILGIYFSYHHEAYCTRGVYLHDPAVVLAAVDPSLMTYTEGVVRVQTCGITRGLTVLYNKQKRFEEVTEWSDKPTVKVA VTVDAPAVVKLVMERLMES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10042608 [exp]	0	1
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	4.0	0.9332
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	6.5	0.9323
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	7.3	0.9319
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	8.8	0.9268
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10040376 [exp]	8.8	0.9185
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	13.9	0.9319
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	14.1	0.9283
AT5G55060			unknown protein		Lus10040061 [exp]	14.3	0.9307
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	14.7	0.9030
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	18.5	0.9215

Compare expression of checked genes

Lus10042608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.