Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53690 114 / 5e-29 RING/U-box superfamily protein (.1) AT3G14250 109 / 1e-27 RING/U-box superfamily protein (.1) AT3G45470 77 / 2e-16 IBR domain containing protein (.1) AT5G37560 79 / 5e-16 RING/U-box superfamily protein (.1) AT2G26135 76 / 2e-15 RING/U-box protein with C6HC-type zinc finger (.1) AT5G60250 72 / 7e-14 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G45580 71 / 1e-13 RING/U-box protein with C6HC-type zinc finger (.1) AT2G25360 70 / 3e-13 RING/U-box superfamily protein (.1) AT2G25370 70 / 6e-13 RING/U-box superfamily protein (.1.2) AT2G21420 69 / 1e-12 IBR domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022064 [exp] 162 / 1e-49 AT3G14250 78 / 2e-18 RING/U-box superfamily protein (.1) Lus10000412 [exp] 103 / 8e-25 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 102 / 9e-25 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 89 / 2e-20 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10036128 [exp] 78 / 1e-15 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038341 [exp] 61 / 4e-10 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036127 [exp] 61 / 5e-10 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036202 [exp] 55 / 4e-08 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10042609 [exp] 42 / 4e-05 AT3G53690 59 / 4e-12 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G064400 [exp] 122 / 1e-31 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 106 / 2e-26 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 103 / 2e-25 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 81 / 2e-17 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G104700 [exp] 82 / 3e-17 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.013G120300 [exp] 78 / 1e-16 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 77 / 3e-16 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.015G117600 [exp] 64 / 5e-11 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 64 / 5e-11 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G150100 [exp] 64 / 6e-11 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10042610 pacid=23181667 polypeptide=Lus10042610 locus=Lus10042610.g ID=Lus10042610.BGIv1.0 annot-version=v1.0 ATGGCTGACGTTGCCGTCGACCGGCGGACCAACATTCGAATGCACAATCTGCGTCGAAACGACACCGTTGCAAGAATCGTTCAACCCAAAGGGATGCGCA CACTTGTAATGCAATCGGTGCACCGCAAAGTACATCGAGGCAGAGCTCGGAGAAATCGTCGACCCGAATATCCTGCCCCGGATTCGAGTGCCAGGGGACT CTCTGACCCGGAGTACTGCCGCCAAATCCTCCCCGCTAAGCTGTTCCACCGGTGGGGGCTGGCGCTGGTTGACTCTGCAATCGAAGCTTCCCAGAAGTTC TACTGCCCTTTTCTGGATTGCTCTGTTTTGCTCATCAACGACGCCGCCGGCAACAACAAATGTACGTGTCCAAGCTGCAAGAGGGCGATTTGTGTGAAGT GCAAGTGTCCGTGGCATAAGAGGATGGATTGCAAGACGTACGAGGATTTGAAACGACAAGGAAAGCTGCAGGATAAGAAGCTGGAGCGGCTTGCTGGATT GAACAAGTGGAGAAAGTGCCCTCATTGCAATTTCTACATTGGCAAAGACGATGACTGCAGCTATGTTAAATGCAGATCTAAAAACAATGGGACAGTGCCT GACGACGTCGCCGTCGACAAAAAACAACAGCGACCGAGCGACGACGGGAAAAGAACCGTCTGCGCAGCTTACAATGGGGACGACCGCCGCACATCCGGAC CAACATTCGTATGCGAAATCTGCGTCGAAACGCACCGTTGCGACAATCCTACTTCTACTGAAATCACTGCACCGTACGATACATCGAGACGGAGCTCTCC GAGAAATCGTCGACCCGAATCTCCTGCCCCGAACCCGGATGCTAGGGCACTCTCGACCCGGAACACTGCCGCCAAATCCTGCCCGCTAAATTGTTCGAGC GGTGGGGTCTCGCGCTTGTTGACTCCGCAATCGACGCTTCCCAGATCTTGTACTGCCCATATTTGGACTGCTCCCTTTTGCTAG
AA sequence Show only first row Show all	>Lus10042610 pacid=23181667 polypeptide=Lus10042610 locus=Lus10042610.g ID=Lus10042610.BGIv1.0 annot-version=v1.0 MADVAVDRRTNIRMHNLRRNDTVARIVQPKGMRTLVMQSVHRKVHRGRARRNRRPEYPAPDSSARGLSDPEYCRQILPAKLFHRWGLALVDSAIEASQKF YCPFLDCSVLLINDAAGNNKCTCPSCKRAICVKCKCPWHKRMDCKTYEDLKRQGKLQDKKLERLAGLNKWRKCPHCNFYIGKDDDCSYVKCRSKNNGTVP DDVAVDKKQQRPSDDGKRTVCAAYNGDDRRTSGPTFVCEICVETHRCDNPTSTEITAPYDTSRRSSPRNRRPESPAPNPDARALSTRNTAAKSCPLNCSS GGVSRLLTPQSTLPRSCTAHIWTAPFC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	0	1
AT1G04670			unknown protein		Lus10004041 [exp]	2.0	1.0000
					Lus10006918 [exp]	3.5	1.0000
					Lus10007508 [exp]	3.5	1.0000
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	4.9	1.0000
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	5.9	1.0000
AT3G14880			unknown protein		Lus10039196 [exp]	6.2	0.9925
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	6.5	0.9914
					Lus10027066 [exp]	6.9	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	7.5	1.0000
					Lus10040397 [exp]	7.5	1.0000

Compare expression of checked genes

Lus10042610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.