Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23535 287 / 5e-101 KOW domain-containing protein (.1) AT5G54600 66 / 9e-14 Translation protein SH3-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022069 [exp] 314 / 1e-111 AT5G23535 284 / 5e-100 KOW domain-containing protein (.1) Lus10006905 [exp] 300 / 2e-106 AT5G23535 280 / 3e-98 KOW domain-containing protein (.1) Lus10014683 [exp] 160 / 6e-49 AT2G48140 145 / 6e-43 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10005180 [exp] 70 / 5e-15 AT5G54600 246 / 3e-83 Translation protein SH3-like family protein (.1.2) Lus10038125 [exp] 70 / 7e-15 AT5G54600 246 / 6e-83 Translation protein SH3-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062600 [exp] 303 / 1e-107 AT5G23535 254 / 6e-88 KOW domain-containing protein (.1) Potri.001G415400 [exp] 67 / 4e-14 AT5G54600 243 / 2e-82 Translation protein SH3-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Lus10042614 pacid=23181761 polypeptide=Lus10042614 locus=Lus10042614.g ID=Lus10042614.BGIv1.0 annot-version=v1.0 ATGGGTTGGAAAGCAGCGGAAAAGCTTATCAGACACTGGAAAATACTAAGAGGAGATAATGTAATGATCATCAGAGGCAAGGATAAAGGCGAGACTGGTG TGGTCAAACGTGTAGTCCGCTCCCAGAATCGTGTCATTGTCGAGGGTAAAAATCTGGTTAAAAAGCACATAAAAGCAGGCGAAGGTCATGAAGGAGGCAT CTTTACCGTCGAAGCTCCACTCCATGCCTCAAATGTCCAAGTTGTCGACCCAGTCACAGGGAGACCTTGCAAGGTCGGCATTAAGTATTTGGAGGATGGT ACCAAAGTAAGAGTGTCAAGAGGTATAGGAGCATCTGAATCCATCATTCCACGTCCTGAGATTTTGAAGATCAGGACAACGCCAAGACCAACTGTTGCTG GTCCGAAGGATACTCCGATTGATCTGGTACTGGAGAAGACATACGACTCCAAAACAGGGAAGGGCATGCCTGATCTTTGA
AA sequence Show only first row Show all	>Lus10042614 pacid=23181761 polypeptide=Lus10042614 locus=Lus10042614.g ID=Lus10042614.BGIv1.0 annot-version=v1.0 MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVVKRVVRSQNRVIVEGKNLVKKHIKAGEGHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGIKYLEDG TKVRVSRGIGASESIIPRPEILKIRTTPRPTVAGPKDTPIDLVLEKTYDSKTGKGMPDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	0	1
AT3G17300		EMB2786	unknown protein		Lus10017110 [exp]	2.4	0.9287
AT5G47320		RPS19	ribosomal protein S19 (.1)		Lus10027711 [exp]	4.9	0.9029
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	5.3	0.9313
AT5G18800			Cox19-like CHCH family protein...		Lus10033991 [exp]	6.7	0.9163
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	8.7	0.9091
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031979 [exp]	8.8	0.9261
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10023733 [exp]	8.9	0.9196
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10021933 [exp]	11.1	0.8857
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	11.2	0.9075
AT5G50090			unknown protein		Lus10004229 [exp]	11.7	0.8932

Compare expression of checked genes

Lus10042614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.