Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22640 201 / 2e-58 PAP85 cupin family protein (.1) AT2G28490 72 / 3e-13 RmlC-like cupins superfamily protein (.1) AT2G18540 69 / 3e-12 RmlC-like cupins superfamily protein (.1) AT4G36700 67 / 1e-11 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022070 [exp] 907 / 0 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10042617 [exp] 599 / 0 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10022072 [exp] 311 / 1e-103 AT3G22640 114 / 4e-29 cupin family protein (.1) Lus10037937 [exp] 101 / 2e-22 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1) Lus10041722 [exp] 101 / 3e-22 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10011364 [exp] 92 / 9e-20 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10006420 [exp] 61 / 2e-09 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10011816 [exp] 55 / 1e-07 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G002500 [exp] 378 / 1e-126 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.005G212266 [exp] 197 / 1e-58 AT3G22640 128 / 2e-33 cupin family protein (.1) Potri.005G212333 [exp] 176 / 3e-51 AT3G22640 76 / 2e-15 cupin family protein (.1) Potri.007G029100 [exp] 99 / 2e-21 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1) Potri.009G054700 [exp] 72 / 4e-13 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10042615 pacid=23181652 polypeptide=Lus10042615 locus=Lus10042615.g ID=Lus10042615.BGIv1.0 annot-version=v1.0 ATGAGAGGTGTTAGTGTGGTAGGTTTTGTGCTTCTCTCTGTTTTGGCTCTATGTTCAGCCAAGAAAGATGTAGAACTGGAGCAGTGCCAGGAGCTATGCA AGCAACAGCCGAAGTACGACGAGCAGCAGAAGGTGATCTGCCTCAAGGAATGCAAGGAATACGCTCGAAAGAAATCGGGGCGGGGAAGCGAAGAAACCGA CCCGAAGAAGAGGCTGGAGGAATGCAAGCACCAGTGCAAGCAGCATCAATTTTCCGACGACGAGCAGAAAAGAGCTTGCAGGACCAAGTGCGAGAAGCAG TACAAGGAAGGACGCGGCCGAATTGGGAACTACTACTACGAAGAAGAACAGGAAGAATCGAAAGGAGAGAATCCTTACGTTTTCACGGAGGAACATTTCG AGTCGAAATCCCAGAGCCAGCATGGAAGAGTTGATGTCCTCCGCAAGTTCACCGACAAATCGGAGCTCCTGAAGGGGATCGAGAATTTCAGGATTGGGTT TCTGGAAGCTAATCCACAGACATTTATTCCTCCTGCCCATTTCGATGCTGATGGGGTTTTCTTTGTTGCCCAAGGAAGAGGAACGTTTACGATGATTGAA GGGAACAGAGGGCGAATGACGAGCAGCAGCGAGATTAAGAGGCACAGCTTCAACATTGAAGCTGGAGACGTGGTTAGGGTTTATGCTGGAAGTCCTGTTT ACTTTGTGAACAAACCTGAAAGCCAGAAACTTGTGATCATCAAGTTCATCCGACCAGTCAACCTTCCTGGATCATTCGAGGCATTCCATGGGCCAGGTGG CGAGAATCCGGAATCGTTCTTCAGAGCATTCAGCTCCGAGCTGCTTGCTGCTGCTTTCAAGGTGGACAAGCAGAAGGTACAGAGGATCTTCAAACAACAG GAGGGAGAAATCTTGAAAGCTACAAGAGAGCAGATTAGGGCACTGAGCCACGGCGAGGAAGGTGGAGGCATTTGGCCGTTCGGAGGCGAATCTACTGGCC CTTTCAATCTTCTTCACAGGCGTCCTACTCAAAAAAACACCTTTGGCCAGCTGTGGGAAGCTGATCCCAACGAATTCGAGCAGTTCCGTGATCTCGACCT CATGGTCTCATTCGCCAACATCACTCAGGGAGCAATGGCTGGACCATTCTACAACACAAAGGCCACAAAGATAGCCTATGTGGTGGGTGGGGAAGGGTAC TTCGAGATGGCCTGCCCTCATGTGGCTAGTGGCTCTAGCGACACGGGAAGGCAGACCATAGGTCCGCAGAGCCGTGGAGGCCAGAAATATGGTAAAGTAC GTTCCCAGTTACGACGAGGAACTGTGTTCATCGTCCCGGCAGGTCACCCTGTCGTGACAGTGGCTTCTGCAAACAACCACCTGGAAGTATTGTGCTTCGA GGTGAACGCACAGGGGAACTTCAGGTTCTCTCTGGCTGGGAAGGACAATGTAATGAGCAAGATGGAGAGCGAGGCTTTGGAGCTCGGGTTCGGGGCCCCA GCTAGAGAAGTGGAACAGATATTCAAGAACCAGAATGAGGAGTTCTTCTTCCCGGGACCGGAGTGGCAGAAACAGCAGCACAGGCGAGGGTATAGCTCTG CGTAA
AA sequence Show only first row Show all	>Lus10042615 pacid=23181652 polypeptide=Lus10042615 locus=Lus10042615.g ID=Lus10042615.BGIv1.0 annot-version=v1.0 MRGVSVVGFVLLSVLALCSAKKDVELEQCQELCKQQPKYDEQQKVICLKECKEYARKKSGRGSEETDPKKRLEECKHQCKQHQFSDDEQKRACRTKCEKQ YKEGRGRIGNYYYEEEQEESKGENPYVFTEEHFESKSQSQHGRVDVLRKFTDKSELLKGIENFRIGFLEANPQTFIPPAHFDADGVFFVAQGRGTFTMIE GNRGRMTSSSEIKRHSFNIEAGDVVRVYAGSPVYFVNKPESQKLVIIKFIRPVNLPGSFEAFHGPGGENPESFFRAFSSELLAAAFKVDKQKVQRIFKQQ EGEILKATREQIRALSHGEEGGGIWPFGGESTGPFNLLHRRPTQKNTFGQLWEADPNEFEQFRDLDLMVSFANITQGAMAGPFYNTKATKIAYVVGGEGY FEMACPHVASGSSDTGRQTIGPQSRGGQKYGKVRSQLRRGTVFIVPAGHPVVTVASANNHLEVLCFEVNAQGNFRFSLAGKDNVMSKMESEALELGFGAP AREVEQIFKNQNEEFFFPGPEWQKQQHRRGYSSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22640		PAP85	cupin family protein (.1)		Lus10042615 [exp]	0	1
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	6.0	0.8577
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	7.3	0.8785
					Lus10034724 [exp]	7.4	0.8351
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	12.4	0.8411
AT1G17400			unknown protein		Lus10039921 [exp]	12.6	0.8626
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	18.2	0.8590
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	19.3	0.7951
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	22.6	0.8500
					Lus10009439 [exp]	22.6	0.8567
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	27.5	0.8560

Compare expression of checked genes

Lus10042615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.