Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61750 208 / 5e-68 RmlC-like cupins superfamily protein (.1) AT1G02335 140 / 2e-41 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G04200 140 / 3e-41 RmlC-like cupins superfamily protein (.1) AT4G14630 139 / 1e-40 GLP9 germin-like protein 9 (.1) AT5G38910 138 / 1e-40 RmlC-like cupins superfamily protein (.1) AT3G05950 137 / 4e-40 RmlC-like cupins superfamily protein (.1) AT5G38940 136 / 8e-40 RmlC-like cupins superfamily protein (.1) AT5G38960 135 / 1e-39 RmlC-like cupins superfamily protein (.1) AT5G39120 135 / 3e-39 RmlC-like cupins superfamily protein (.1) AT5G39110 134 / 4e-39 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022071 [exp] 384 / 4e-137 AT5G61750 222 / 2e-73 RmlC-like cupins superfamily protein (.1) Lus10029010 [exp] 145 / 2e-43 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 145 / 3e-43 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 145 / 4e-43 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 144 / 1e-42 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 143 / 2e-42 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10032017 [exp] 144 / 6e-42 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 142 / 7e-42 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10030048 [exp] 141 / 8e-42 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109600 [exp] 244 / 3e-82 AT5G61750 225 / 6e-75 RmlC-like cupins superfamily protein (.1) Potri.012G111500 [exp] 226 / 5e-75 AT5G61750 201 / 2e-65 RmlC-like cupins superfamily protein (.1) Potri.013G051600 [exp] 150 / 2e-45 AT3G05950 296 / 1e-102 RmlC-like cupins superfamily protein (.1) Potri.013G051700 [exp] 149 / 1e-44 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Potri.013G051800 [exp] 140 / 1e-41 AT3G05950 245 / 8e-83 RmlC-like cupins superfamily protein (.1) Potri.009G140400 [exp] 140 / 2e-41 AT5G39110 247 / 3e-83 RmlC-like cupins superfamily protein (.1) Potri.009G140350 [exp] 140 / 2e-41 AT5G39110 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Potri.013G063101 [exp] 138 / 4e-41 AT5G39130 238 / 2e-80 RmlC-like cupins superfamily protein (.1) Potri.013G063050 [exp] 137 / 4e-40 AT5G39130 281 / 1e-96 RmlC-like cupins superfamily protein (.1) Potri.013G064100 [exp] 137 / 4e-40 AT5G39130 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10042616 pacid=23182032 polypeptide=Lus10042616 locus=Lus10042616.g ID=Lus10042616.BGIv1.0 annot-version=v1.0 ATGGTGAGGAGAAATTCAAATTCCTTGATGATCCAATGCCTCTCCTTCTTCATCATTCTCACCACACACTGCTCCAATTCAGACGGAACAAATCTCCAAG ACACTTGCCCTACATCTCCAACAACAACAACCAAACAACAAACAATCTTCATCAACGGATACCCGTGCAAGAACCCTGCAAACGTCTCCGCCTCCGATTT CAAATCCTCGAAACTCGACCGCCCCGGCGAAACCGACGCATTCCTCCGCTCCGCTTTGACACTCGCCACCGCATTCGACTTCCCAGGCCTGAACACTCTC GGCCTTTCGGTGGCCAGGACCGATCTCGATGTGGACGGTCTGCAATTGCCTCATTCGCATCCCAGGGCGTCCGAGATCTTGTTCGTCAGCCAAGGGGTGG TCCTCGTCGGGTTTGTGGATACGGACAACAAGCTGTTTCAGAAGACTCTCAAGGCTGGAGATGTGTTTCTGTTTCCGAGGGCTTTGCTGCATTTCTGCTT AAATGCTGGGTTTGAGAAAGCTCTGATTTTTTCCTTTCTGAATAGTCAGAATCCTGGACTCGTCACCATTGCCGACGCCATGTTCGTTCAAGATCGTGAA CATGATGCAATGATGGCGAAGCTTGTAAGCAGGATTAAATCTGTTGCCTCCATGGAGAAAAGTGGAGTCCTTGGTACTTAA
AA sequence Show only first row Show all	>Lus10042616 pacid=23182032 polypeptide=Lus10042616 locus=Lus10042616.g ID=Lus10042616.BGIv1.0 annot-version=v1.0 MVRRNSNSLMIQCLSFFIILTTHCSNSDGTNLQDTCPTSPTTTTKQQTIFINGYPCKNPANVSASDFKSSKLDRPGETDAFLRSALTLATAFDFPGLNTL GLSVARTDLDVDGLQLPHSHPRASEILFVSQGVVLVGFVDTDNKLFQKTLKAGDVFLFPRALLHFCLNAGFEKALIFSFLNSQNPGLVTIADAMFVQDRE HDAMMAKLVSRIKSVASMEKSGVLGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61750			RmlC-like cupins superfamily p...		Lus10042616 [exp]	0	1
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	1.4	0.9923
AT4G18425			Protein of unknown function (D...		Lus10013969 [exp]	2.0	0.9910
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10006969 [exp]	2.8	0.9878
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	3.5	0.9890
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	4.5	0.9872
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	5.1	0.9757
AT1G10800			unknown protein		Lus10041270 [exp]	7.0	0.9835
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	8.8	0.9847
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10025859 [exp]	8.9	0.9424
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	8.9	0.9822

Compare expression of checked genes

Lus10042616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.