Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22640 197 / 1e-56 PAP85 cupin family protein (.1) AT2G28490 95 / 2e-20 RmlC-like cupins superfamily protein (.1) AT2G18540 83 / 2e-16 RmlC-like cupins superfamily protein (.1) AT4G36700 78 / 5e-15 RmlC-like cupins superfamily protein (.1) AT5G44120 50 / 3e-06 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042615 [exp] 626 / 0 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10022070 [exp] 615 / 0 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10022072 [exp] 408 / 2e-141 AT3G22640 114 / 4e-29 cupin family protein (.1) Lus10006420 [exp] 108 / 5e-25 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10011364 [exp] 107 / 9e-25 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10041722 [exp] 98 / 4e-21 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 94 / 7e-20 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G002500 [exp] 412 / 7e-140 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.005G212266 [exp] 203 / 5e-61 AT3G22640 128 / 2e-33 cupin family protein (.1) Potri.005G212333 [exp] 176 / 2e-51 AT3G22640 76 / 2e-15 cupin family protein (.1) Potri.009G054700 [exp] 105 / 4e-24 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G029100 [exp] 102 / 9e-23 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10042617 pacid=23182004 polypeptide=Lus10042617 locus=Lus10042617.g ID=Lus10042617.BGIv1.0 annot-version=v1.0 ATGAAAGGAAAGGGAGTTAGTAGTGTAGCAGCTGTACTTCTTATTCTCTCTGTTTTAGTACTCTGTTCCGTACTGACTTCATCCACTGATCCTGAGAAGA AGGTGAAGGAATGCAAACAACAGTGCGCGAAGCAACACGACGACGAGGATCAGAAGAGAATTTGTGACACCCAGTGCGAGAAGCAGTACAGGGAAGGCGG CCAAAAGGGAAGCGGAACGGACTACGATGATGGACATAACATCTTAACAGCAACCGATCCTGAGAAAAAGCTGAAGGATTGCAGGGCGGAGTGTCCGGAG GGAGATACAAAGGAGAGAGCTCAGTGCAGGTATCACTGCCAGCAGAAATACGGCCGAGATACTGGCGGCGAGGAGGAGAAAGAAGAGAATCCTTACGTTT TTAGGGACAAACATTTCGACACGGAGTATCGGACCGAGCATGGAAGGTTTGACATCCTCCGGAGGTTCACCGAAAAATCAGAGCTTCTGAAGGGAATCGA CAATTTCAGGATCGCTGTTCGCGAGGTTAATCCGCAGACGTTTATTATGCCTGGACACTACGATGCTGACGGTGTTCTCTTCGTTGCTCAAGGACGAGGA ACGTTTACGAGGATCCAGGAAAACAGAGGAGGAAGAACATCTTCCAGCGAGATCAAGAGACAGAGCTTTAACATCGAAACCGGAGATGTGTTCAGGAATG ATGCTGGAACTACTGTTTACCTGGTGAACAAGGATGAAACCCAGAAACTTGTGATCATTGCACTCATCCGACCCGTCAACCTTCCTGGATCATATGAGAC ATTCTTTGGACCGGGTGGCGTAAACCCAGAATCTTTCTTCAGAGCATTCAGTCCGGAGCTCCTTGAAGCTGCTTTCAAGGTTGACAGAGAGAAGCTGCAG AGGATATTCCAACAGAAGGAAGGACCAATCGTGAAGGCTTCAAGAGAGCAAGTCAAGGCTTTGAGCCACGATGATGAGAAAGGTGGAGGCGGCATTTGGC CGTTTGGCAGTACTGAATCAAGCACTGCCTTCAATCTTCTAAATAGACGCCCTACTCAAAGGAACAAGTACGGCCAGCTGTGGGAAGCCAAGCCGGAAGA TTTCGAGCAATTTCGGGATCTAAACCTCATCGTCTCATTCGCCAACATCACTCAGGGAGCAATGGCTGGACCATTCTACAACTCAAAGGCGACAAAGATA GCCTACATAGTGGATGGCGAAGGTTACTTCGAAATGGCTTGCCCTCATGTCGCCCCTAGTGGCTCTAGCAGCAAGGGAAGCCAAAGCCAGAGCCAACAGG GCCACGGCCGAACCTACGGCAAAGTAGCTTCCAAGTTGACTAGGGGCACAGTGTTCATCGTCCCCGCAGGGCATCCAGTTGCCATGGTGGCGTCCGCGAA CAACAATCTGCAAGTGTTGTGTTTCGAGGTGAACGCGCAGGGGAACTTCAAGTTCCCTCTGGCTGGGACGGACAATGTGATGAGCAAGATGGAGAGGGAG GCTTTGGGGCTTGGGTTCGGGGTTTCGGGAAAGGAAGTGGAGCAGATATTCAACAATAACCAGGATGAGGAGTTCTTCTTCGCCGGACCGGAATGGCAGC AGAGTCGGCAGCAACGCGCCTAA
AA sequence Show only first row Show all	>Lus10042617 pacid=23182004 polypeptide=Lus10042617 locus=Lus10042617.g ID=Lus10042617.BGIv1.0 annot-version=v1.0 MKGKGVSSVAAVLLILSVLVLCSVLTSSTDPEKKVKECKQQCAKQHDDEDQKRICDTQCEKQYREGGQKGSGTDYDDGHNILTATDPEKKLKDCRAECPE GDTKERAQCRYHCQQKYGRDTGGEEEKEENPYVFRDKHFDTEYRTEHGRFDILRRFTEKSELLKGIDNFRIAVREVNPQTFIMPGHYDADGVLFVAQGRG TFTRIQENRGGRTSSSEIKRQSFNIETGDVFRNDAGTTVYLVNKDETQKLVIIALIRPVNLPGSYETFFGPGGVNPESFFRAFSPELLEAAFKVDREKLQ RIFQQKEGPIVKASREQVKALSHDDEKGGGGIWPFGSTESSTAFNLLNRRPTQRNKYGQLWEAKPEDFEQFRDLNLIVSFANITQGAMAGPFYNSKATKI AYIVDGEGYFEMACPHVAPSGSSSKGSQSQSQQGHGRTYGKVASKLTRGTVFIVPAGHPVAMVASANNNLQVLCFEVNAQGNFKFPLAGTDNVMSKMERE ALGLGFGVSGKEVEQIFNNNQDEEFFFAGPEWQQSRQQRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22640		PAP85	cupin family protein (.1)		Lus10042617 [exp]	0	1
AT3G51490		TMT3	tonoplast monosaccharide trans...		Lus10010886 [exp]	7.7	0.6172
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	9.4	0.7060
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10008232 [exp]	13.1	0.6222
AT1G21130		IGMT4	indole glucosinolate O-methylt...		Lus10030187 [exp]	15.1	0.6859
AT5G51105			Protein of unknown function (D...		Lus10043285 [exp]	18.3	0.6808
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10007193 [exp]	24.8	0.6241
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	24.9	0.6530
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10033879 [exp]	27.3	0.6530
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	29.5	0.6530
					Lus10011605 [exp]	31.5	0.6530

Compare expression of checked genes

Lus10042617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.