Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63240 573 / 0 DNAse I-like superfamily protein (.1) AT2G32010 567 / 0 CVL1 CVP2 like 1 (.1.2) AT1G05470 370 / 2e-119 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G65090 336 / 2e-108 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 322 / 7e-103 DNAse I-like superfamily protein (.1.2) AT1G34120 286 / 6e-88 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT2G37440 256 / 2e-78 DNAse I-like superfamily protein (.1.2) AT1G71710 222 / 2e-63 DNAse I-like superfamily protein (.1.2) AT4G18010 218 / 6e-62 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G01900 212 / 9e-62 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006904 [exp] 677 / 0 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10014684 [exp] 594 / 0 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 553 / 0 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10006597 [exp] 380 / 1e-126 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10022074 [exp] 361 / 2e-117 AT3G63240 298 / 7e-96 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 347 / 1e-111 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 329 / 9e-105 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 325 / 5e-104 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 339 / 8e-103 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212700 [exp] 683 / 0 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 677 / 0 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 601 / 0 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G155700 [exp] 598 / 0 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G247800 [exp] 350 / 1e-113 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 349 / 3e-112 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 334 / 1e-107 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 276 / 2e-84 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.017G074200 [exp] 261 / 9e-80 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.012G041600 [exp] 237 / 1e-70 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10042619 pacid=23181714 polypeptide=Lus10042619 locus=Lus10042619.g ID=Lus10042619.BGIv1.0 annot-version=v1.0 ATGGAGAAAAAGGTTATAGCATGCACCACCAAGAAAAGTAGAACAACAGAGCGGTTGAGCAAGAGACGGTCTGATCGAGTCAGGCGGAGTAAAATTGACT TTGATGCTGCTCAAGTTATAAAAGTTAACAATTATAGGGTTTTTGTAGCAACTTGGAATGTAGCTGGAAAATCTCCTCCAAGCTACTTGAGTCTTGAGGA CTGGCTTCATACTTCACCTCCAGCTGACATTTACGTTCTTGGATTTCAAGAGATTGTTCCATTAAACGCCGGAAACGTTCTAGGAACGGAGGACAACGGC CCTGCGAGAAAATGGTTGGATCTCATCAGAAAGGCTCTGAACAGCCTTCCCGGCGGTAACGACGGCGGAGGCCCCTGCTGCACTCCTTCTCCGATTCCCG ATCCACTCGTGGAGTCCGACGCTGACTTCGAGGGGCAACAAAACGCGCCGCCATTTTTCCACCGTCGTTCTTTCCAGTCGTTGAGCCGCAGCATGAGGAT GGGCGACGACCTTGCCGCCGGCGATATGGTGGGGCCATCACAGCCGAGGCTGGACCGGCGGTTCAGTGTCTGCGACAGAGGGGAGAGAATGAACGATTAC TATGACCCGAGTTTAAGATGGGGCTCGTCGGACGATGAGAATGGGGCGGCAGGGGATGATGGTTCCCCTGTTTCGGCTCGCTGTTCGCCGGTTGTTTACG CCGGCAGGTCGAGGAGGTACTGTTTGGCGGCCAGCAAGCAGATGGTGGGAACTTTCTTGACGGTTTGGGTTAGGAGCAACCTTAGAGATGATGTGAAGAA CATGAAGGTGTCCTGTGTTGGCAGAGGATTAATGGGTTATTTAGGCAACAAGAAGGAGGGGGATGAGTTAAGGAGGAATTCTGATGTGATGGAGATTCTT AGGAAAACTAGGTTTCCAAGAGTTCATGTTATGGGAGATGAGAAGTCTCCTCGTACAATTCTAGAGCATGATCGGATTATATGGTTAGGCGATTTGAATT ATCGAATTGCCTTGTCGTACCGGTCTGTGAAGGCACTAGTAGAGATGCACAACTGGAGGTTATTGTTACAGAATGACCAGGCATGTCTCCGGATGGAGAA GAGGCTAGGAAGAGTGTTTGAAGGATGGCATGAGGGGAGGATATACTTCCCTCCAACATACAAATACTTGAACAATTCGGATAGATATGCCGGTGATGAC AGGCACCCAAAAGAGAAGCGAAGAACTCCAGCTTGGTGTGATCGTATTTTATGGTACGGAAGAGGCCTCTGCCAGCTGTCTTATGTGCGTGGAGAATCGA AGTTCTCCGATCATAGACCGGTGTACAGCATATTTTTGGCAGAGGTGGAGTCCATTAACCGTAGTCGATTCAGGAAACGTATGAGCTGTTCAAGCTCCAG AGTTGAGGTTGAAGAGCTGCTGCCTCCACATGGGAACAAGTTGGAAATTGTTGCTACTGATGCTGCTGCTGTTGCCTCTGGTTGGAATGGCAATCTGTGC AAACCCAGAATGGAAAGGTTGGAACTTTGGCCATATTTTCGCTTTCTCATTGAGCTACATTTCCTATTTCATGTATATCTATCCATGTTCACCAAGCTGG AATCTTTTTTGTCCATAGAAACTGATGGCTCCACAAGATGGGCAGCTGGCAGATTTTCTCCTAGCAGTAAAAAGGCGTGTCTTTCTGAGCAACCAATTTC TCGCCATCGCTGCTCCATCCCGTCAATTGGGTGGATTGAGGTTAATGTCAACGTCACGATAATATTAGCGCGTGTTGCAGTTCGAGGGCTGAAGAGGGTG GCAGTAAAAACAATACGTGCTCTAGGTCGCGTGAGTTTGAGGGAGTTTGTTTGTTTGTTGGTTCAGTTCTGGTTCTGGTTCTGGTTCAGTTCGTGGCAAC CCAAAGTGGAAGTAGCAGGTAGTACGAGTAGTGAAGTGTCAGTCAGGTATGTTTGTTCGTTGAAATTTGAGAATTCCCACCATACACGTGTCCTTCTTGT TGATTGGTGGGCTGGAAACAACAACATGTTTTAG
AA sequence Show only first row Show all	>Lus10042619 pacid=23181714 polypeptide=Lus10042619 locus=Lus10042619.g ID=Lus10042619.BGIv1.0 annot-version=v1.0 MEKKVIACTTKKSRTTERLSKRRSDRVRRSKIDFDAAQVIKVNNYRVFVATWNVAGKSPPSYLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNG PARKWLDLIRKALNSLPGGNDGGGPCCTPSPIPDPLVESDADFEGQQNAPPFFHRRSFQSLSRSMRMGDDLAAGDMVGPSQPRLDRRFSVCDRGERMNDY YDPSLRWGSSDDENGAAGDDGSPVSARCSPVVYAGRSRRYCLAASKQMVGTFLTVWVRSNLRDDVKNMKVSCVGRGLMGYLGNKKEGDELRRNSDVMEIL RKTRFPRVHVMGDEKSPRTILEHDRIIWLGDLNYRIALSYRSVKALVEMHNWRLLLQNDQACLRMEKRLGRVFEGWHEGRIYFPPTYKYLNNSDRYAGDD RHPKEKRRTPAWCDRILWYGRGLCQLSYVRGESKFSDHRPVYSIFLAEVESINRSRFRKRMSCSSSRVEVEELLPPHGNKLEIVATDAAAVASGWNGNLC KPRMERLELWPYFRFLIELHFLFHVYLSMFTKLESFLSIETDGSTRWAAGRFSPSSKKACLSEQPISRHRCSIPSIGWIEVNVNVTIILARVAVRGLKRV AVKTIRALGRVSLREFVCLLVQFWFWFWFSSWQPKVEVAGSTSSEVSVRYVCSLKFENSHHTRVLLVDWWAGNNNMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63240			DNAse I-like superfamily prote...		Lus10042619 [exp]	0	1
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	4.4	0.7886
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Lus10005181 [exp]	12.2	0.7778
AT3G09720			P-loop containing nucleoside t...		Lus10026871 [exp]	16.4	0.7735
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	18.6	0.7793
AT5G05800			unknown protein		Lus10024453 [exp]	21.9	0.6456
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	22.9	0.7802
AT1G48360			zinc ion binding;nucleic acid ...		Lus10041269 [exp]	27.6	0.7351
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	27.9	0.7612
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	28.0	0.7550
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	36.3	0.7416

Compare expression of checked genes

Lus10042619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.