Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63240 102 / 7e-26 DNAse I-like superfamily protein (.1) AT1G05470 100 / 3e-25 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G32010 86 / 7e-20 CVL1 CVP2 like 1 (.1.2) AT2G37440 67 / 2e-13 DNAse I-like superfamily protein (.1.2) AT1G34120 54 / 5e-09 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 54 / 7e-09 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT5G65090 53 / 2e-08 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT1G71710 52 / 2e-08 DNAse I-like superfamily protein (.1.2) AT5G04980 46 / 3e-06 DNAse I-like superfamily protein (.1.2) AT2G01900 43 / 3e-05 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022074 [exp] 176 / 2e-53 AT3G63240 298 / 7e-96 DNAse I-like superfamily protein (.1) Lus10006904 [exp] 140 / 3e-39 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10014684 [exp] 130 / 2e-35 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10042619 [exp] 120 / 7e-32 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 101 / 2e-25 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10003010 [exp] 59 / 2e-10 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10028697 [exp] 57 / 1e-09 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028727 [exp] 57 / 1e-09 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10025305 [exp] 56 / 1e-09 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050000 [exp] 133 / 5e-37 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 132 / 1e-36 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 101 / 1e-25 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G155700 [exp] 99 / 9e-25 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.005G197800 [exp] 59 / 1e-10 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.001G145900 [exp] 58 / 3e-10 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.010G247800 [exp] 57 / 4e-10 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.003G088300 [exp] 56 / 2e-09 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G078000 [exp] 54 / 7e-09 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 54 / 8e-09 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042620 pacid=23181700 polypeptide=Lus10042620 locus=Lus10042620.g ID=Lus10042620.BGIv1.0 annot-version=v1.0 ATGAAGCTTTCGTGGCCCAAGACACTGGTCAAGAAGTGGTTCAATATCAAGAATAAAGTTGAGGAATTTCAAGCAGACAACAATGATGTTTACTATTGTG GAAGAGATTGTGATGAACAAGGTGACTGTGAATATAGGAGAAGCAACTTCATGGAGAAAAAGGTTATAGCATGCACCACCAAGAAAAGTAGAACAACAGA GCGGTTGAGCAAGAGACGGTCTGATCGAGTCAGGCGGAGTAAAATTGACTTTGATGCTGCTCAAGTTATAAAAGTTAACAATTATAGATTTCAAGAGATT GTTCCATTAAACGCCGGAAACGTTCTAGGAACGGAGGATAACGGCCCGGCGAGAAAATGGTTGGATATCATCAGAAAGGCTCTGAACAGCCTTCCTTGCC GCCGGCGGTATGGTGGGGCCACCACACCGGAGGCTGGACCGGCGGTTCAGTGTCTGCGACAGAAGGGACAGAATGAACGATTACTATGA
AA sequence Show only first row Show all	>Lus10042620 pacid=23181700 polypeptide=Lus10042620 locus=Lus10042620.g ID=Lus10042620.BGIv1.0 annot-version=v1.0 MKLSWPKTLVKKWFNIKNKVEEFQADNNDVYYCGRDCDEQGDCEYRRSNFMEKKVIACTTKKSRTTERLSKRRSDRVRRSKIDFDAAQVIKVNNYRFQEI VPLNAGNVLGTEDNGPARKWLDIIRKALNSLPCRRRYGGATTPEAGPAVQCLRQKGQNERLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63240			DNAse I-like superfamily prote...		Lus10042620 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10025098 [exp]	4.9	0.8980
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	7.3	0.9003
AT3G15550			unknown protein		Lus10025758 [exp]	10.1	0.9070
AT4G31890			ARM repeat superfamily protein...		Lus10041017 [exp]	11.5	0.8805
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	18.3	0.8793
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030007 [exp]	21.3	0.8689
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	21.9	0.8942
AT1G04030			unknown protein		Lus10008231 [exp]	22.4	0.8892
					Lus10030118 [exp]	22.8	0.8882
AT3G54750			unknown protein		Lus10029345 [exp]	24.1	0.8843

Compare expression of checked genes

Lus10042620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.