Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07130 151 / 3e-47 STN1, ATSTN1 Nucleic acid-binding, OB-fold-like protein (.1) AT2G24490 46 / 4e-06 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022075 [exp] 264 / 9e-92 AT1G07130 150 / 4e-47 Nucleic acid-binding, OB-fold-like protein (.1) Lus10026954 [exp] 43 / 4e-05 AT2G24490 252 / 7e-84 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Lus10019976 [exp] 40 / 0.0004 AT3G02920 258 / 8e-86 Replication protein A, subunit RPA32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212900 [exp] 203 / 9e-68 AT1G07130 182 / 1e-59 Nucleic acid-binding, OB-fold-like protein (.1) Potri.006G167600 [exp] 40 / 0.0004 AT3G02920 219 / 9e-71 Replication protein A, subunit RPA32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10042621 pacid=23182021 polypeptide=Lus10042621 locus=Lus10042621.g ID=Lus10042621.BGIv1.0 annot-version=v1.0 ATGGCGCAGAATCTTCAGAACACTCACGTAAAGCTCCTAGCTTTCGATCTCCAATCCCTGTCCCAAATCCCAACTTCTTCTTCCTCCGACGCCGCCGTCT CCTTCGCTCGCCGCAACGTTCCCGTCACCCGCGCCGAAATTCTCGGAACCGTTACCTCCCGCATCTCCAAACCTGGAAAATTCCTAAGATTCTCCATCGA CGATGGCACCGGATGCGTCCCCTGCATCCTCTGGCTCAACCACATGTCCTCCCCTTACTTCTCCCGTAGACGCCCACCAGATGTTCGACTAATTGCCGAT ATAGCCAACGACTTCGCTTCCCTTGTCATGATAGGGGCAGTCGCCAGAGTCCGCGGCAGGATCACTGGGTACAGAGGCGCGGTGCAGATTACAGTATCTG ACGTTGTGGTTGAAAGAGACCCTAACATGGAAACTTTGCATTGGCTGGATTGCATCAGGCTGGCCCGCAAGTGCTACGACCCTATGGCTCTTTCTCGGAA ATGA
AA sequence Show only first row Show all	>Lus10042621 pacid=23182021 polypeptide=Lus10042621 locus=Lus10042621.g ID=Lus10042621.BGIv1.0 annot-version=v1.0 MAQNLQNTHVKLLAFDLQSLSQIPTSSSSDAAVSFARRNVPVTRAEILGTVTSRISKPGKFLRFSIDDGTGCVPCILWLNHMSSPYFSRRRPPDVRLIAD IANDFASLVMIGAVARVRGRITGYRGAVQITVSDVVVERDPNMETLHWLDCIRLARKCYDPMALSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Lus10042621 [exp]	0	1
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027987 [exp]	8.5	0.8615
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031688 [exp]	9.8	0.8472
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	10.3	0.8731
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	11.4	0.8717
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	16.2	0.8031
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	20.7	0.8700
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10000117 [exp]	23.6	0.8574
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	27.9	0.8625
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	28.1	0.8673
AT3G53630			unknown protein		Lus10023752 [exp]	33.2	0.8659

Compare expression of checked genes

Lus10042621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.