Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22750 605 / 0 Protein kinase superfamily protein (.1) AT4G14780 569 / 0 Protein kinase superfamily protein (.1) AT3G63260 531 / 0 ATMRK1 Protein kinase superfamily protein (.1.2) AT3G01490 525 / 0 Protein kinase superfamily protein (.1) AT5G50000 520 / 0 Protein kinase superfamily protein (.1) AT4G31170 239 / 3e-75 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 226 / 2e-70 Protein kinase superfamily protein (.1) AT1G62400 213 / 6e-66 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT3G46930 214 / 3e-65 Protein kinase superfamily protein (.1) AT5G58950 214 / 2e-64 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022076 [exp] 698 / 0 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10039357 [exp] 595 / 0 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 585 / 0 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 518 / 0 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 515 / 0 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 503 / 2e-178 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 275 / 3e-89 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 244 / 1e-77 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 230 / 9e-72 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213200 [exp] 654 / 0 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 652 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.008G156000 [exp] 615 / 0 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 615 / 0 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.012G079000 [exp] 534 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 528 / 0 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 520 / 0 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 518 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 236 / 7e-74 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 236 / 7e-74 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10042622 pacid=23181914 polypeptide=Lus10042622 locus=Lus10042622.g ID=Lus10042622.BGIv1.0 annot-version=v1.0 ATGAACGGGAAAGCAGTTGAAGTAGCTGAGGTAAGGAGGTTGGTTTCCAACAAGGCTAATAATGAAGCGGGTGGTGGTGGTGATGTGAGCAACAAGGAGA TGTTCTTCAGAGCAGATAAGATTGATTTCAAGAGCTGGGATATTCAGCTGGAGAAGCACCTCAGTAGGGCTTGGTCAAGGGATAGGGAAGTGGTGCAGTC CAAAAAGGAAGAGTGGGAGATTGATTTGGGGAAACTTGATATTAGGCATGTCATAGCTCATGGCACTTATGGTACTGTTTACAGAGGCAACTACGATGGC CAAGATGTTGCTGTGAAAGTACTGGACTGGGGGGAGGATGGCATTGCTACTGTAGCTGAAACTGCTGCTCTTCGGTCATCTTTCCGGCAAGAAGTTGCTG TCTGGCACAAGCTCGATCATCCGAATTTTGTAGGAGCTTCAATGGGGACATCAAATCTAAAGATCCCTAATTCAAACGATGGCAACAATTCGATTCCTTC GCGGGCGTGTTGTGTGGTTGTCGAATACCTGCCAGGTGGGACGCTAAAGAAATTTCTAATCAGAAATAGGAGAAAGAAACTTGCGTTTAAGGTTGTGATT CAACTTGCTTTGGACCTTTCTAGGGGTTTGAACTACCTTCACTCCAAGAAGATTGTGCATCGTGATGTGAAAACTGAGAACATGCTGCTAGATTCTCAGA GGACATTGAAAATTGCTGACTTCGGTGTTGCTCGAGTCGAAGCACAAAATCCACGGGATATGACTGGGGAAACCGGCACTCTTGGCTACATGGCTCCGGA GGTCCTGGACGGTAAACCATACAACCGGAAGTGCGATGTGTACAGTTTCGGAATATGCTTATGGGAAATCTATTGTTGTGACATGCCTTACCCTGATCTT AGCTTTGCTGAGATATCCTCTGCTGTCGTTAGACAGAACTTGAGGCCAGAGGTCCCCAGGTGCTGCCCAAGTTCATTTGCCGGCATAATGAGAAGATGTT GGGATGCACAGCCGGATAAGCGACCGGAGATGGACGAGGTTGTGAGGCTACTAGAAGCCATAGACACGAGTAAAGGCGGCGGTATGATACCGGAGGACCA GTCTCGTGGCTGTTTCTGTTTCACTCCGATGCGTCGTGGCCCGTGA
AA sequence Show only first row Show all	>Lus10042622 pacid=23181914 polypeptide=Lus10042622 locus=Lus10042622.g ID=Lus10042622.BGIv1.0 annot-version=v1.0 MNGKAVEVAEVRRLVSNKANNEAGGGGDVSNKEMFFRADKIDFKSWDIQLEKHLSRAWSRDREVVQSKKEEWEIDLGKLDIRHVIAHGTYGTVYRGNYDG QDVAVKVLDWGEDGIATVAETAALRSSFRQEVAVWHKLDHPNFVGASMGTSNLKIPNSNDGNNSIPSRACCVVVEYLPGGTLKKFLIRNRRKKLAFKVVI QLALDLSRGLNYLHSKKIVHRDVKTENMLLDSQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDL SFAEISSAVVRQNLRPEVPRCCPSSFAGIMRRCWDAQPDKRPEMDEVVRLLEAIDTSKGGGMIPEDQSRGCFCFTPMRRGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	1.4	0.8882
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	2.8	0.8464
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	4.9	0.8437
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10016739 [exp]	5.9	0.8328
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	9.0	0.8259
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10025788 [exp]	9.5	0.8382
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	12.5	0.8398
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10025824 [exp]	13.7	0.7879
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	13.9	0.8077
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	15.5	0.8389

Compare expression of checked genes

Lus10042622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.