Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03090 1048 / 0 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT5G35360 427 / 7e-142 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G36160 213 / 1e-57 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 206 / 4e-55 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G29900 47 / 4e-05 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022077 [exp] 900 / 0 AT1G03090 606 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10022078 [exp] 522 / 0 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10017534 [exp] 428 / 2e-142 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 427 / 1e-141 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 421 / 2e-134 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 384 / 2e-125 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042901 [exp] 241 / 4e-72 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10006934 [exp] 205 / 9e-55 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10024748 [exp] 202 / 4e-54 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213300 [exp] 1164 / 0 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.018G146300 [exp] 431 / 1e-143 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.006G078200 [exp] 429 / 1e-142 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.002G092700 [exp] 213 / 2e-57 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.005G169100 [exp] 211 / 7e-57 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.010G023100 [exp] 44 / 0.0006 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF02785 [flax] [poplar] Biotin_carb_C Biotin carboxylase C-terminal domain CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042623 pacid=23182027 polypeptide=Lus10042623 locus=Lus10042623.g ID=Lus10042623.BGIv1.0 annot-version=v1.0 ATGGCGTCCATGGCATCTGTTCTCCGGCGTAAGTTCCGTGTGCAGCCGTTTACCTTGCAGTTTCGTTTCTTCTCCGCCGAGTCGCCTTTTCTCGACGGGA AAACGGCCCAACAGCAACCGATACAGAAGATTCTGATCGCCAACAGAGGAGAGATTGCTTGCAGGATCATGCGGACTGCCAAGCGTCTAGGCGTGCGAAC AGTAGCGGTTTACAGCGACGCTGATAAGGATTCTCTTCATGTGAAATCTGCTGATGAGGCCGTTCGTCTAGGCCCCCCTCCAGCTCGGCTCAGTTATTTG AACGGCTCGTCGATTGTGGAGGCTGCAATTCGTACTGGCGCGCAGGCTATCCATCCTGGGTATGGATTCTTATCAGAAAGCTCTGAATTTGCTAAGCTTT GCGAAGATAAGGGTCTTACGTTTGTTGGCCCTCCAGCGTCAGCTATACAGGACATGGGTGATAAAAGTGCATCAAAAAGGATAATGGGTGCAGCAGGGGT GCCACTTGTACCGGGTTATCATGGTAGCAATCAGGATATCGAGTTCATGAAGTCAGAAGCAGATAAGATTGGGTATCCAGTCTTAATAAAGCCAACTCAT GGAGGTGGAGGAAAGGGCATGAGGATAGTGGGAACTCCAGATGAATTTGTGGACGCCTTCCTTGGGGCACAGCGTGAAGCTGCTGCTTCTTTTGGTGTAA ATACAATATTGCTAGAGAAGTATATAACCCAGCCAAGACACATAGAGGTCCAGATATTCGGGGACAAACTTGGCAATGTACTGCATTTATATGAAAGGGA CTGCAGCGTGCAAAGGAGACATCAGAAGATTATTGAAGAAGCCCCTGCTCCAAATGTTTCTTGTGACTTCCGCTCTCATTTGGGCGCGGCTGCTGTCTCT GCAGCCAAGGCTGTGGGTTACCACAATGCTGGGACTGTAGAGTTCATTGTGGACACACTCTCTGGGAATTTCTATTTTATGGAGATGAACACTCGTCTGC AGGTAGAGCATCCTGTGACTGAGATGGTTGTTGGACAAGATCTTGTGGAATGGCAAATTCGTGTTGCAAATGGAGAACCATTGCCTATTAGTCAGTCAGA AGTACCATTATCTGGTCATGCCTTTGAAGCCAGAATTTATGCTGAAAATGTCCCCAAGGGGTTCCTTCCTGCAACTGGAATTCTTCACCACTATAACCCT GTTCCAGCTTCACCGACAGTGCGGGTTGAGACTGGAGTTGCACAGGGCGACACTGTAAGCATGCATTATGATCCAATGATTGCAAAGCTTGTAGTTTGGG GGGAACAGCGAGGTGCTGCATTAGTAAAACTGAGGGATTCTTTATCTAGATTTCAGGTCGCTGGTGTACCAACCAATATCAGTTTTCTCCAAAAGCTTGC TAACCACAGGGAATTCGAAAATGGGAATGTGGAAACCCATTTCATTGAGCACCATAAAGACGATCTTTTTGTTGATTCAAACAATTCAGTGTTGGCAAAA GAAGCCCGTGATAAGGCCAAGTCCATTGCAGCCCTGGTAGCTGCATGTTTGTGTGAAAAGGATCATTGTGCAACAAGAGCGAACCTCCCTGGTTCACTCT CGTTATGGTATAAACATCCCCCTTTTAGAATTCATCATAATGCCACAAGGGCCATGGTATTTGAATGGGATAATGAATATGGTACTAGCAGCTCAAATCT CTTCACAGTTTCAACCACTTACCAGCAAGATGGGTCCTATTTCACCGAGTTAGGAGAAGTTGGTTCGGCTGGTCTGGAGGTGAAAGCAAAACATCTAGAA AAGCTCAATTTTAGAGTTGAAGTTAATGGATCGAGCATGCATGTCAATTTGGCTACTTATGTTGAGGGTGGGACAGAGCACATTCATGTATGGCTTGGAT CGGATTATTACCATTTCAAACAAAAGTGTGGGCTTGAGTTGTCTGAAGAGGACGATACTCAACAGAAGACCACTTTTGAGAATAAATCTCACCCTCCAGG AACTGTTGTTGCTCCAATGGCTGGTTTAGTTGTCAAAGTTCTGTTGAGCAATGGAGCAAAGGTTGTTGAAGGGCAACCTGTGTTGGTCTTAGAGGCGATG AAAATGGAGCACATAGTGAAGTCACAGTCTTCTGGATATCTTCATGGACTTCAAGTTGGAGCTGGCCAACAGGTTTCCGATGGTAGCTTCCTCTTTGCCG TCAAGGTCAGTGATTGA
AA sequence Show only first row Show all	>Lus10042623 pacid=23182027 polypeptide=Lus10042623 locus=Lus10042623.g ID=Lus10042623.BGIv1.0 annot-version=v1.0 MASMASVLRRKFRVQPFTLQFRFFSAESPFLDGKTAQQQPIQKILIANRGEIACRIMRTAKRLGVRTVAVYSDADKDSLHVKSADEAVRLGPPPARLSYL NGSSIVEAAIRTGAQAIHPGYGFLSESSEFAKLCEDKGLTFVGPPASAIQDMGDKSASKRIMGAAGVPLVPGYHGSNQDIEFMKSEADKIGYPVLIKPTH GGGGKGMRIVGTPDEFVDAFLGAQREAAASFGVNTILLEKYITQPRHIEVQIFGDKLGNVLHLYERDCSVQRRHQKIIEEAPAPNVSCDFRSHLGAAAVS AAKAVGYHNAGTVEFIVDTLSGNFYFMEMNTRLQVEHPVTEMVVGQDLVEWQIRVANGEPLPISQSEVPLSGHAFEARIYAENVPKGFLPATGILHHYNP VPASPTVRVETGVAQGDTVSMHYDPMIAKLVVWGEQRGAALVKLRDSLSRFQVAGVPTNISFLQKLANHREFENGNVETHFIEHHKDDLFVDSNNSVLAK EARDKAKSIAALVAACLCEKDHCATRANLPGSLSLWYKHPPFRIHHNATRAMVFEWDNEYGTSSSNLFTVSTTYQQDGSYFTELGEVGSAGLEVKAKHLE KLNFRVEVNGSSMHVNLATYVEGGTEHIHVWLGSDYYHFKQKCGLELSEEDDTQQKTTFENKSHPPGTVVAPMAGLVVKVLLSNGAKVVEGQPVLVLEAM KMEHIVKSQSSGYLHGLQVGAGQQVSDGSFLFAVKVSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	0	1
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	1.0	0.9709
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	1.4	0.9709
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	1.7	0.9653
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	2.8	0.9624
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	3.2	0.9574
AT4G32190			Myosin heavy chain-related pro...		Lus10041037 [exp]	3.2	0.9410
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	3.7	0.9522
AT5G47040		LON2	lon protease 2 (.1)		Lus10001083 [exp]	3.7	0.9282
AT4G32190			Myosin heavy chain-related pro...		Lus10006190 [exp]	4.0	0.9499
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	4.2	0.9529

Compare expression of checked genes

Lus10042623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.