Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02670 262 / 1e-84 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT1G03840 263 / 8e-84 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT3G50700 261 / 1e-83 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G55110 254 / 8e-81 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G13810 255 / 1e-80 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT5G44160 253 / 3e-80 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT5G66730 253 / 4e-80 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT2G02080 254 / 5e-80 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT5G03150 252 / 1e-79 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G14580 249 / 6e-79 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022080 [exp] 398 / 3e-140 AT1G03840 268 / 1e-87 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10039869 [exp] 257 / 1e-85 AT1G03840 304 / 1e-102 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10010820 [exp] 258 / 1e-84 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 263 / 2e-83 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 259 / 2e-82 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004497 [exp] 259 / 2e-82 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10026497 [exp] 258 / 4e-82 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10029904 [exp] 254 / 1e-80 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 256 / 3e-80 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048000 [exp] 274 / 2e-88 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.005G215100 [exp] 273 / 3e-88 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.017G017100 [exp] 267 / 1e-85 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 266 / 4e-85 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G028800 [exp] 263 / 2e-83 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G125600 [exp] 262 / 5e-83 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.006G129300 [exp] 259 / 4e-82 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 257 / 5e-81 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.016G088500 [exp] 255 / 9e-81 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.008G142500 [exp] 256 / 1e-80 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042626 pacid=23181997 polypeptide=Lus10042626 locus=Lus10042626.g ID=Lus10042626.BGIv1.0 annot-version=v1.0 ATGTTCCCTTCTTCTTCTTCTTCTTCTTTTCCTGGTCATGCCATGTTCAATAATTCAGCAGCTTCTTTCTCCGAAGAAGAAGAAGATGCTAGCAGACTAC TACTAGTCCCTCACAACCACCATCAAGTTCAAGACAACTTCTTCAATCTTATCACCAACCAGCAGCCCGCACCATCGTCGTCTCTACTCTTTCCCAACTC GGCCACAGTCGTCGTCCCCGGTACTTCTCTCCCGCCGGCCAAGGCCAAGAAGAAACGCAGCCTCCCCGACCCGGAAGCGGAGGTGATAGCGTTATCACCA AAGGCGCTGCTAGCGACCAACAGATTCGTGTGCGAGATATGCAAGAAGGGGTTTCAGAGGGACCAAAACCTCCAGCTCCACCGTAGAGGACACAACCTGC CGTGGAAGCTCAAGCAGCGAAACCACAACAAGGAGGAGCCTATCAAGAAGAAGGCCTACGTCTGTCCCGAGCCGAGCTGCGTCCACCACCACCCTTCCAG GGCTCTCGGAGACCTCACGGGCATTAAAAAGCACTACTGCAGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAATGCTCGAAAATCTACGCCGTACAC TCCGACTGGAAGGCTCATTCCAAGACTTGCGGCACTAGGGAGTACCGATGTGACTGTGGCACCCTTTTCTCTAGTCTTGGCTACATCGAGATCGCAAGTC ACAACTGGTCGGTGTACGTGGCTAATCATCTGCTTATTGGGCTAGAGGAGTATTACTGTCGTAGAAATATGTCTTACCCCAGCGGAGACATGAATTTTAT GGTGATGCATTTTCTGGATATGGTCGATCTGGACAGTATCGGACCGAAAGTCAGGCCAACTTGCGCTTACTGGGATGAGGACCTCGTCTCTACTGTCGTC CGAAGGATTAGGAACCCAGGCGAGACATGGTCTTTCAAGTTGAAGAAAAGGGAGTCACTCGAAGCAGTGTTGGAACCCATTATTCTGAATTGGTTGGAAG ACGTCTTCAATGAAGGACCGACTCAGCTTTCCTCGTCCTATGGCCGGACCCAGCCTCGTCAGCAATCAGCACGACGGGGTCACCTCCCGTAA
AA sequence Show only first row Show all	>Lus10042626 pacid=23181997 polypeptide=Lus10042626 locus=Lus10042626.g ID=Lus10042626.BGIv1.0 annot-version=v1.0 MFPSSSSSSFPGHAMFNNSAASFSEEEEDASRLLLVPHNHHQVQDNFFNLITNQQPAPSSSLLFPNSATVVVPGTSLPPAKAKKKRSLPDPEAEVIALSP KALLATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQRNHNKEEPIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVH SDWKAHSKTCGTREYRCDCGTLFSSLGYIEIASHNWSVYVANHLLIGLEEYYCRRNMSYPSGDMNFMVMHFLDMVDLDSIGPKVRPTCAYWDEDLVSTVV RRIRNPGETWSFKLKKRESLEAVLEPIILNWLEDVFNEGPTQLSSSYGRTQPRQQSARRGHLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10042626 [exp]	0	1
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10003141 [exp]	5.7	0.9671
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10025641 [exp]	6.2	0.9661
					Lus10007416 [exp]	8.7	0.9673
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10028419 [exp]	12.1	0.9086
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	15.3	0.9325
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	20.0	0.8673
AT1G12980	AP2_ERF	DRN, ESR1	ENHANCER OF SHOOT REGENERATION...		Lus10014345 [exp]	20.7	0.9641
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	24.6	0.9633
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10016904 [exp]	25.9	0.9617
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	26.5	0.9624

Compare expression of checked genes

Lus10042626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.