Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03080 586 / 0 kinase interacting (KIP1-like) family protein (.1) AT4G02710 535 / 5e-174 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 387 / 7e-115 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 293 / 8e-83 kinase interacting (KIP1-like) family protein (.1) AT2G30500 146 / 8e-37 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 133 / 2e-32 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT2G22560 131 / 4e-31 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 129 / 2e-30 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 122 / 3e-28 Kinase interacting (KIP1-like) family protein (.1) AT2G47920 100 / 1e-23 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022079 [exp] 990 / 0 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 793 / 0 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 771 / 0 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 429 / 1e-129 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 196 / 4e-51 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 184 / 2e-47 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 134 / 1e-31 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 129 / 5e-30 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 128 / 1e-29 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049600 [exp] 685 / 0 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 672 / 0 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 455 / 3e-150 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 459 / 3e-140 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 154 / 6e-39 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.008G156200 [exp] 155 / 3e-38 AT3G22790 762 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 148 / 7e-37 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.007G011300 [exp] 137 / 7e-33 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 132 / 4e-31 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 127 / 2e-29 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10042627 pacid=23181996 polypeptide=Lus10042627 locus=Lus10042627.g ID=Lus10042627.BGIv1.0 annot-version=v1.0 ATGGCGGCGCAAGCCAAGTCTAAACGGATGTATTCATGGTGGTGGGACAGCCACATTAGCCCCAAGAACTCAAAATGGCTTCAGGAGAATCTAACAGATA TGGATTCCAACGTAGCGAAGATGATCAAGCTCATTGAAGAAGATGCCGATTCATTTGCAAGGAGGGCAGAAATGTATTATAAGAAACGTCCAGAGCTAAT GAAATTGGTTGAAGAGTTCTACAGAGCATACCGTGCGTTGGCTGAAAGATATGATCATGCAACTGGAGTTATCCGTCAGGCTCACCAGGCTCAATTTGGG ATAAGTGACGATTCTCCAGCAAGTGCTATTGCTGATGGTGAGCCCCGTACACCTGATCTTCCATCCATCCGTGCATTTATGGATCAGGATGAGTTGGAAA AGGATGATTTCGGAGTCTCCCCGTCACACTTTTATACTGCAAAGAGAAGTGGTACCCTCATGGACGAAGCTGATTCTGTTATCAGCAAAAAGGGTCCTAA ACATTTCAACGACTTGTTTGGTTCCGGCGATGGGATGGGAAGAGCAAGGAAGGGGCTTAATTTTCAGGATTCGGGAGAGAGAGAACGAGGAGGCAAAATC AATGGTAGTGATGACGGCAGATCTCAGGTTCCATATGATTCAGACCGAATGGTCAAAGCTGAGCAAGAAATTTTGACCCTGAAGAATGCTCTTGCTAAAT TAGAAGCTGAAAAGGAAGCTGATCTACGCCAGTACCAACAAAGTATGGAAAAGTTGACCAGTCTAGAGTTGGAAGTATCTCGTGCAAAAGAAGATTCTTT TGGACTCGTTGACCGAGCTATTAAAGCTGAAGAAGAAGCCCAAACTTTGAAGGAGAACCTTGCCAAGGTAGAAGCTGAGAGGGAAACCAATTTTCTTCAA TACCAGCAGTGTCAGGATAAAATATCTAACCTAGAGAAGAATGCATCTCTTGCTGAGCAGAATACGGGAGAGCTAAGTGAGCGAGCTACTAAAGCTGAAA CTGAAGCTCTATCACTAAAAGAAGATCTGGTTAAGTTAGATGCTGAAAAGGAAGCTGCTCTTGTTCAGTTTGCACAATGCCTGGAGAGGATCTCTGACAT GGAGAGCAAGTTACTGCAAGCTGAGGAAGATGCTCGGACTTTTAGAAAGCGTGCAGAAAAGGCTGAAGAGGAAGTTGAAAGCTTGAAGCAGGCGTCAGCA AAGCTAGCTGAAGAGAATGAAGCTACCGCACTTCGCTTCCAGCAGTGTCTTGATACAATACAAAGTCTAGAGCATAAGCTTGCTTGCGCTGAGGAGGAGA CCCGAAGGCTAAGCTCTTTGATAGACGATGGGAATTCCAAGTTGAAGGGTGCCGAAGAAAAGTGTATGGTGTTGGAGACATCTAATCAGGCCATGCATGT CGACCTGGAAGCTCTTGCACAGAAAATGGCTGCTCAAAATGAGGAACTTACAGAAAAGCAGAAGGAACTGAGCAGGCTTTGGACTTGTGTGCAAGAAGAA CATTTGAGGTTTGTTGAGGCCGAGACTGCTTTTCAAACTCTGCAAAACTTACATTCTCAATCTCAGGACGAACTGAGGTCTTTGGATGCAGAGCTTCAGA AAAGGGTTCAGATTTTAGAGGACCTTGAAGCTCGTAACAATAATCTACAAACCGAAGTTCGGCAGGATGCTGAATCAGAGTTGCAAGAGAGATCATTTGA GGAAACGAAAGAAGATCAGACTGCAATGTTTATGGACCTGCAAGAACTACACAAAAGAATAAGAGCAGTTGAAAACGCAGTTAAGGAAAAGGAGAGACTG GTCATGCTCGAAATCACAGCTGCTAATAGCAAGCTTCTGGCTGCAACGAGAGAATTTGACGACTTAAAATCTCGAACCAGCTTCGAAGTTGAAGGTAGCG GAAGAGGTAAAACTGTTAATCACAAAGCCGGGAAGAAAGACCTCATCTTTCAGAGACAACAAACACATGAAATCATGGAAGAAGGGAGCGAAGTGATGAC AAAGGACATAATACTCGATCAGGTCTCTGAGAGTTCGTCTTATAGAATCATGAGCAGAAGGAATGCTGCCAAGACTGACGATTCAATGCTTGAAATCTGG GAAGCAGCTGGTCTGGAAGGCAGCATTGATATGACCGTTGAAAAAACTTGCGAAGGCATTTCTGCGTCAGGTAGAAAGAAACACAACCGCGACAATCCCT CGGCAGAGTCACTGTTTGAGAGAGAGGTTTCCATGGACAAACTAGAGAACTCCAGGAGACTCTCAGGGTCTTCTCAAGAAGCAAACGGGAGAAAGATTCT GGAAAGACTGGATTCCGACATGCAAAAGCTGACAGACCTTCAGAAAGTCGTGCAAGACTTGAAGAGGAAGGTAGAGATTGATGAGAAGACAAAGAAGGGC AAAGGAATTGAATTCGACACTGTGAAGGAGCAGTTAGATGAACAAGAGGACGACATCATGAAGCGGCTCGAAATGAACCGCAAGCTGACCAAGAGAATTG AAACCGATTCGCCGTCCTTGGTCTTAGACGAGAAAGCAAGTGCCAGCAGGAAGAAACTCTCAGAGCAAGCAAGAAGGGAATCGGAGAAAATCGGACGATT GCATTTGGAGCTGCAGAAATTACAGCGTCTTCTGCTAAAGCAAGCTCCGGAGCGTACAACTAGCGTCCTGCTGCGTGATTATCTATATGGTGGTGGGAGG ACGGTCCCGAAGACCACGAAAAGGAAGAAGTCGCATTTCTGTTCTTGTATGCATCAGCCTGTGACAAGAGGAGATTGA
AA sequence Show only first row Show all	>Lus10042627 pacid=23181996 polypeptide=Lus10042627 locus=Lus10042627.g ID=Lus10042627.BGIv1.0 annot-version=v1.0 MAAQAKSKRMYSWWWDSHISPKNSKWLQENLTDMDSNVAKMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHQAQFG ISDDSPASAIADGEPRTPDLPSIRAFMDQDELEKDDFGVSPSHFYTAKRSGTLMDEADSVISKKGPKHFNDLFGSGDGMGRARKGLNFQDSGERERGGKI NGSDDGRSQVPYDSDRMVKAEQEILTLKNALAKLEAEKEADLRQYQQSMEKLTSLELEVSRAKEDSFGLVDRAIKAEEEAQTLKENLAKVEAERETNFLQ YQQCQDKISNLEKNASLAEQNTGELSERATKAETEALSLKEDLVKLDAEKEAALVQFAQCLERISDMESKLLQAEEDARTFRKRAEKAEEEVESLKQASA KLAEENEATALRFQQCLDTIQSLEHKLACAEEETRRLSSLIDDGNSKLKGAEEKCMVLETSNQAMHVDLEALAQKMAAQNEELTEKQKELSRLWTCVQEE HLRFVEAETAFQTLQNLHSQSQDELRSLDAELQKRVQILEDLEARNNNLQTEVRQDAESELQERSFEETKEDQTAMFMDLQELHKRIRAVENAVKEKERL VMLEITAANSKLLAATREFDDLKSRTSFEVEGSGRGKTVNHKAGKKDLIFQRQQTHEIMEEGSEVMTKDIILDQVSESSSYRIMSRRNAAKTDDSMLEIW EAAGLEGSIDMTVEKTCEGISASGRKKHNRDNPSAESLFEREVSMDKLENSRRLSGSSQEANGRKILERLDSDMQKLTDLQKVVQDLKRKVEIDEKTKKG KGIEFDTVKEQLDEQEDDIMKRLEMNRKLTKRIETDSPSLVLDEKASASRKKLSEQARRESEKIGRLHLELQKLQRLLLKQAPERTTSVLLRDYLYGGGR TVPKTTKRKKSHFCSCMHQPVTRGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02710			Kinase interacting (KIP1-like)...		Lus10042627 [exp]	0	1
					Lus10001135 [exp]	6.5	0.8372
AT4G17140			pleckstrin homology (PH) domai...		Lus10011036 [exp]	9.4	0.8786
AT5G17910			unknown protein		Lus10020367 [exp]	11.5	0.8565
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	15.0	0.8581
AT2G29620			unknown protein		Lus10009543 [exp]	16.3	0.8567
AT1G03080			kinase interacting (KIP1-like)...		Lus10022079 [exp]	23.6	0.8128
AT4G31570			unknown protein		Lus10026934 [exp]	23.7	0.8510
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	24.4	0.8433
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	24.5	0.8469
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	27.5	0.8429

Compare expression of checked genes

Lus10042627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.