Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20960 922 / 0 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 852 / 0 U5 small nuclear ribonucleoprotein helicase (.1) AT5G61140 523 / 1e-164 U5 small nuclear ribonucleoprotein helicase (.1.2) AT3G27730 256 / 1e-72 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT4G32700 123 / 1e-28 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT1G59760 89 / 8e-18 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 70 / 6e-12 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 65 / 1e-10 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT2G06990 62 / 1e-09 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025168 [exp] 1127 / 0 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10016048 [exp] 1126 / 0 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 521 / 2e-164 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10022082 [exp] 473 / 6e-158 AT1G20960 379 / 2e-114 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10014551 [exp] 244 / 4e-68 AT3G27730 1354 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10032137 [exp] 226 / 3e-62 AT3G27730 1291 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10022115 [exp] 129 / 2e-30 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10027599 [exp] 74 / 3e-13 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 71 / 4e-12 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095500 [exp] 1007 / 0 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 962 / 0 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 525 / 2e-165 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.001G348200 [exp] 242 / 1e-67 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Potri.018G036600 [exp] 115 / 6e-26 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.004G228700 [exp] 94 / 2e-19 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 72 / 2e-12 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 69 / 1e-11 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.006G078000 [exp] 64 / 3e-10 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 57 / 3e-08 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF02889 [flax] [poplar] Sec63 Sec63 Brl domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10042628 pacid=23181685 polypeptide=Lus10042628 locus=Lus10042628.g ID=Lus10042628.BGIv1.0 annot-version=v1.0 ATGAATATAAATAAGAAAGCTCAGCCATGGCTGAAGAGCAAGCTTGCTCACGCCATTTTCAATCTCTTTCTCTCTACTTTGATAGACCAAGAAGAGAGGA ACCATATTGAGGAGGACATGATGAACTCTGGTGCAGATTTTGGTGCGATTCTACAACAGCTTCGAGCGACACGAGCAACACCAAAAGAAAGGCAAAAGAA CCTGGAGAAGAGCATAATAAAAGAGGCTCGCAGACTGAAGGATACTATTGTCGGTGATGAGGATAAGGACAGAGATGCAAACTGTGGTTGGGTGAAGAGC CAACTCAAGCTGCTAGACCTGGACGATATTGCTTTCGAACAGTGCGGTCTTCTGATGGCAAATAAGAAGTGTGATCTTCCTGAAGGTTCTTCCAGACATA CGAGCAAGGGTTTTGAAGAAGTTCACGTGCCAGCTTTGAAACCAAAACCTCTGGGTCCCGATGAGAAACTTGTGAGAATATCTGAGATGCCAGAATGGGC ACAGCCTGCTTCTAAAGTTCTGACGATACTTCAGCAGCTTGGTCTTTATAGGAACAAGGATGGATCATTTGATCATAACGGCTATAAGATAGTTTATGTG GCGCCCATGAAAGCTCTTGTGGCTGAAGTTGTTGGCAATTTGTCCAATCGTCTGCAAGAATACGGTGTGAATGTGAAGGAACTAAGTGGAGACCAGTCAC TGACTCGTCAACAAATTGAAGAGACTCGGATAATTGTGACTACACCAGAGAAATGGGATATCATTACCAGGAAATCTAGGGATCGCACTTACACACGTCT AGTTAAACTTGTTATAATCGACGAGATCCATCTTCTTCATGATAGCAGAGGTCCTGTACTGGAAAGTATAGTTTCTAGAACTGTTAGACAGGTTGAAACA ACAAGAGACCATATCAGGATGGTGGGGTTGTCAGCTACACTGCCAAACTATAAAGATGTGGCACGCTTTCTAAGAGTTGACTTGGGAAAAGGCCTTTTCG ACTTTGATAATAGCTACAGACCTGTGCCTCTTGCACAACAGTATATTGGCGTCAACGTCAAGAAGCCATTGCAGAGATTCCAGTTAATGAATGATCTTTG TTACGAGAAGGTGATGGCTATAGCTGGAAAACACCAAACTCTTATTTTTGTGCACTCAAGAAAGGAAACAGCTAAAACTGCGCGAGCAATACGAGACACT GCACTTGTTAAAGATATTCTTGGAAGATTCTTGAAGGAGGACAGTGCTAGCCGTGAGATCCTCCAGAGTCGTACAGATATGGTTAACAGTAATGATCTGA AAGATCTTTTTCCATATGGCTTTGCAGTTCATCATGCAGGTTTGTCAAGGCCTGACCGTCAAATAGTGGAGGATCTTTTTGCCGGTGGGCATATACAAGT ATTAGTTTCTACTGCAACTCTAGCTTGGGGTGTAAATTTGCCTGCTCATACTGTGATCATTAAAGGGACTCAGATTTACAATCCAGAAAAGGGTGCATGG ACTGAACTAAGTCCACTTGATGTTATGCAGATGTTGGGTCGTGCAGGTCGACCACAGTATGATACCTACGGTGAAGGTATTATCATCACTGGTCATGGTG AGCTCCAGTATTATCTTTCTTTGATGAATCATCTGCTTCCTATTGAAAGCCAATTCATATCCAAATTGGTTGATCAGTTGAATGCAGAAATTGTTCTTGG CACCGTTCATAATACTAGAGAAGCCTGCAATTGGCTTGGTTATACATACTTAAATGTCCGAATGTTGAGCAATCCTACCCTTTATGGTCTACCAGCCGAT ATTACACTGAAGCAGAGGAAGGCTGATTTGGTTCATTCAGCTGCTACAATTTTGGACAGGAATAACTTGGTCAAGTACGACAGGAAAAGTGGATATTTCC AGGACAGTCTGGAGGAGCCTAGTGCCAAGATTAATGTTCTTCTTAAAGCTTACATATCACAGCTGAAGCTTGAAGGTCTGTCGTTAAATACTGACATGGT TTATATAACTCAGAGTGCGGGTCGTCTTCTTCGAGCACTTTTTGAGATTGTCTTGAAAAGAGGATGGGCGCAATTGACTGAGAAGACTTTAAACTTATGT AAGATGGTTAATCAGAAGATGTGGAGACAGAGCCCTCTTCGTCAATTTAATGGGACACGGAAAGAGATTCTGATGAAATTGGAAAAGAAATGA
AA sequence Show only first row Show all	>Lus10042628 pacid=23181685 polypeptide=Lus10042628 locus=Lus10042628.g ID=Lus10042628.BGIv1.0 annot-version=v1.0 MNINKKAQPWLKSKLAHAIFNLFLSTLIDQEERNHIEEDMMNSGADFGAILQQLRATRATPKERQKNLEKSIIKEARRLKDTIVGDEDKDRDANCGWVKS QLKLLDLDDIAFEQCGLLMANKKCDLPEGSSRHTSKGFEEVHVPALKPKPLGPDEKLVRISEMPEWAQPASKVLTILQQLGLYRNKDGSFDHNGYKIVYV APMKALVAEVVGNLSNRLQEYGVNVKELSGDQSLTRQQIEETRIIVTTPEKWDIITRKSRDRTYTRLVKLVIIDEIHLLHDSRGPVLESIVSRTVRQVET TRDHIRMVGLSATLPNYKDVARFLRVDLGKGLFDFDNSYRPVPLAQQYIGVNVKKPLQRFQLMNDLCYEKVMAIAGKHQTLIFVHSRKETAKTARAIRDT ALVKDILGRFLKEDSASREILQSRTDMVNSNDLKDLFPYGFAVHHAGLSRPDRQIVEDLFAGGHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW TELSPLDVMQMLGRAGRPQYDTYGEGIIITGHGELQYYLSLMNHLLPIESQFISKLVDQLNAEIVLGTVHNTREACNWLGYTYLNVRMLSNPTLYGLPAD ITLKQRKADLVHSAATILDRNNLVKYDRKSGYFQDSLEEPSAKINVLLKAYISQLKLEGLSLNTDMVYITQSAGRLLRALFEIVLKRGWAQLTEKTLNLC KMVNQKMWRQSPLRQFNGTRKEILMKLEKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10042628 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022082 [exp]	1.0	0.9805
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	2.0	0.9762
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10008047 [exp]	3.0	0.9700
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10038115 [exp]	3.5	0.9682
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	4.2	0.9583
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	4.5	0.9610
					Lus10004294 [exp]	7.3	0.9458
AT2G07820			unknown protein		Lus10015035 [exp]	9.9	0.9553
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Lus10020590 [exp]	12.1	0.8927
AT1G16800			P-loop containing nucleoside t...		Lus10035717 [exp]	13.3	0.9522

Compare expression of checked genes

Lus10042628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.